PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI10G13210.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bZIP | ||||||||
Protein Properties | Length: 392aa MW: 42407.3 Da PI: 6.8008 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 21.7 | 4.3e-07 | 249 | 297 | 14 | 62 |
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 14 ReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 R +A rs +R+ +i+eLe+kv+ L++e ++L +l l+ ++ + ++ OMERI10G13210.1 249 RQSAARSKERRMRYIAELEQKVQILQTEATTLSAQLTLLQRDSSGMATQ 297 89**********************************9999887766665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd14703 | 7.43E-17 | 228 | 290 | No hit | No description |
SMART | SM00338 | 4.5E-9 | 241 | 300 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 2.0E-7 | 249 | 295 | No hit | No description |
SuperFamily | SSF57959 | 1.13E-6 | 249 | 290 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 392 aa Download sequence Send to blast |
MNTTSANELM MHRHVQAAPY AAAPQQQGGK QRAPGLPPTP PPPPAAASSH SSHGDVCMDD 60 TARGGLLPPR KAHRRSRSDV PFGYFQPLPP PSPKMEAGGG WALPGCGGAG DVDLLNAYMS 120 LEGMGGADGL NNSDGDSRGS SMRTNGADSS ENESEDYVGA DSQALLWGGG EAAGKKRRNN 180 AAGEMAARHA RSLSMDSLMG KLSFAANGEP AKFSLEFGSG EFTPAEMKRI MADEKLAEMA 240 LADPKRVKRQ SAARSKERRM RYIAELEQKV QILQTEATTL SAQLTLLQRD SSGMATQNNE 300 LKFRLQSMEQ QAQLRDALNE ALTAEVQRLK LAANEVGDTS SSSNLAHQIQ LRCQNQMLDL 360 HKQQQQQVEQ IPFYQLEQPE QQNGTARNHE SK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK108607 | 0.0 | AK108607.1 Oryza sativa Japonica Group cDNA clone:002-146-H05, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015613793.1 | 0.0 | transcription factor RF2a-like isoform X1 | ||||
TrEMBL | A0A0E0F099 | 0.0 | A0A0E0F099_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI10G13180.1 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3536 | 35 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38900.3 | 1e-62 | bZIP family protein |