PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI10G06720.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Dof

Protein Properties

Length: 493aa MW: 52643.7 Da PI: 8.2451

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI10G06720.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.3	7.8e-39	150	209	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC s++tkfCy+nny+++qPr+fCk C+ryWt+GGa+rnvPvG+grrknk++ OMERI10G06720.1 150 PDKILPCPRCSSMDTKFCYFNNYNVNQPRHFCKHCQRYWTAGGAMRNVPVGAGRRKNKNA 209 7899*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-34	143	207	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.6E-31	152	208	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.574	154	208	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	156	192	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 493 aa Download sequence Send to blast
MHHSKNPQIP PPSSYNPNPP FFVFFLYLLF LLLFQCCSSS SGGARRRARE RESEESLGEM 60 GECRGGGGGG GDGLIKLFGK TIPVQPDAKD VQQHSGSSSS STESDVQETA VAVADPSPRS 120 EVVDGESSPQ PGGGGEAASQ QQKEMKLKKP DKILPCPRCS SMDTKFCYFN NYNVNQPRHF 180 CKHCQRYWTA GGAMRNVPVG AGRRKNKNAT AAAHFLHRVR ACAAAMPTAP HDATNATVLS 240 FGGGHDAPPV TLDLAEQMTR LSKEGLVAHA RNADAAAACS EVSSNRDDEQ IGNTVAKPAN 300 GLQQQHHPPH HPHHSAMNGG GIWPYYTSGI SIPIYPVAPA YWGCMIPPPG AWSLPWPATV 360 QSQAISSSSP PTSAAPSVSS FTLGKHPREG GGDHEARDHH GNGHGKVWVP KTIRIDNADE 420 VARSSIRSLF AFRGGDKADD NEDNGTGAHK LATTVFEPKR DSKTAKHPAI TSLPLLHTNP 480 VALTRSATFQ EGS

Sequence ? help Back to Top

Protein Sequence Length: 493 aa Download sequence Send to blast

MHHSKNPQIP PPSSYNPNPP FFVFFLYLLF LLLFQCCSSS SGGARRRARE RESEESLGEM  60
GECRGGGGGG GDGLIKLFGK TIPVQPDAKD VQQHSGSSSS STESDVQETA VAVADPSPRS  120
EVVDGESSPQ PGGGGEAASQ QQKEMKLKKP DKILPCPRCS SMDTKFCYFN NYNVNQPRHF  180
CKHCQRYWTA GGAMRNVPVG AGRRKNKNAT AAAHFLHRVR ACAAAMPTAP HDATNATVLS  240
FGGGHDAPPV TLDLAEQMTR LSKEGLVAHA RNADAAAACS EVSSNRDDEQ IGNTVAKPAN  300
GLQQQHHPPH HPHHSAMNGG GIWPYYTSGI SIPIYPVAPA YWGCMIPPPG AWSLPWPATV  360
QSQAISSSSP PTSAAPSVSS FTLGKHPREG GGDHEARDHH GNGHGKVWVP KTIRIDNADE  420
VARSSIRSLF AFRGGDKADD NEDNGTGAHK LATTVFEPKR DSKTAKHPAI TSLPLLHTNP  480
VALTRSATFQ EGS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC021893	0.0	AC021893.18 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0060A14, from chromosome 10, complete sequence.
GenBank	AP014966	0.0	AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015615013.1	0.0	cyclic dof factor 1
TrEMBL	A0A0E0EXL6	0.0	A0A0E0EXL6_9ORYZ; Uncharacterized protein
STRING	OMERI10G06460.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2099	37	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	6e-55	cycling DOF factor 2