PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI09G12650.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 851aa MW: 89925.2 Da PI: 5.9305 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 67.3 | 2e-21 | 105 | 160 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe++F+++++p++++r eL+++l+L+ rqVk+WFqNrR+++k OMERI09G12650.1 105 KKRYHRHTPQQIQELEAVFKECPHPDEKQRMELSRRLNLESRQVKFWFQNRRTQMK 160 688999***********************************************999 PP | |||||||
2 | START | 177.2 | 1e-55 | 330 | 560 | 1 | 205 |
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 ela++a++elvk a+ +ep+W s e +n+de+ + f++ + + +ea r+sg+ + +++lv +l+d + +W+e+++ +a+t OMERI09G12650.1 330 ELALAAMDELVKVAQMDEPLWLPSLdggfETLNYDEYHRAFARVLGqcpagYVSEATRESGIAIISSVDLVDSLMDAP-RWSEMFPcvvaRAST 422 5899*************************************8866699******************************.*************** PP EEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--........-TTSEE-EESSEEEEEEEECTCE CS START 82 levissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.......sssvvRaellpSgiliepksngh 161 ++ issg g +qlm aelq+lsplvp R++vf+R+++q+ +g w++vdvSvd p + sss++ ++llp+g++++++ ng+ OMERI09G12650.1 423 TDIISSGmggtrsGSIQLMHAELQVLSPLVPiREVVFLRFCKQHAEGLWAVVDVSVDAVLRPDQngcggssSSSYMGCRLLPTGCIVQDMNNGY 516 *********************************************************988887667778889********************** PP EEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 162 skvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205 skvtwv h+++++ h+l+r+l++sg+a ga++w+a lqrqc+ OMERI09G12650.1 517 SKVTWVVHAEYDETAAHQLYRPLLRSGQALGARRWLASLQRQCQ 560 *******************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.01E-22 | 87 | 162 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.0E-23 | 92 | 162 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 18.301 | 102 | 162 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.5E-19 | 103 | 166 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 6.3E-19 | 105 | 160 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.00E-19 | 105 | 162 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 137 | 160 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 41.584 | 321 | 564 | IPR002913 | START domain |
SuperFamily | SSF55961 | 7.8E-30 | 325 | 560 | No hit | No description |
Pfam | PF01852 | 4.9E-47 | 330 | 560 | IPR002913 | START domain |
SMART | SM00234 | 2.6E-40 | 330 | 561 | IPR002913 | START domain |
CDD | cd08875 | 3.99E-99 | 336 | 560 | No hit | No description |
SuperFamily | SSF55961 | 3.19E-14 | 580 | 833 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 851 aa Download sequence Send to blast |
MSFGGMFDGA GSGVFSYDAA GGGGGGVHNS RLLPTPPQTM DGGQLGDVNR SLAMMGNGGS 60 GSGGDGDSLG RGREDENDSR SGSDNLDGAS GDELDPDNSN PRKKKKRYHR HTPQQIQELE 120 AVFKECPHPD EKQRMELSRR LNLESRQVKF WFQNRRTQMK TQIERHENAL LRQENDKLRA 180 ENMTIREAMR NPMCASCGGA AVLGEVSLEE QHLRIENARL KDELDRVCAL AGKFLGRPIS 240 SISSPGPPSL QACSGLELGV GSNGGFGLGA LGASAAMQSI PDLMGGSSGL TGGPVGSAAM 300 RLPAGIGGLD GAMHAAAADG GAFDRAVLLE LALAAMDELV KVAQMDEPLW LPSLDGGFET 360 LNYDEYHRAF ARVLGQCPAG YVSEATRESG IAIISSVDLV DSLMDAPRWS EMFPCVVARA 420 STTDIISSGM GGTRSGSIQL MHAELQVLSP LVPIREVVFL RFCKQHAEGL WAVVDVSVDA 480 VLRPDQNGCG GSSSSSYMGC RLLPTGCIVQ DMNNGYSKVT WVVHAEYDET AAHQLYRPLL 540 RSGQALGARR WLASLQRQCQ YLAILCSNSL PARDHAAITP VGRRSMLKLA QRMTDNFCAG 600 VCASAAQKWR RLDEWRGEGG GGGGGGGGDG EDKVRMMARH SVGAPGEPPG VVLSATTSVR 660 LPGTLPQRVF DYLRDEQRRG DWDILANGEA MQEMDHIAKG QHHGNAVSLL RPNATSGNQN 720 NMLILQETCT DSSGSLVVYA PVDVQSMHVV MNGGDSAYVS LLPSGFAILP DGHNNGASPS 780 SAEVGGGASP NSAAGGGSNN TGSLVTVAFQ ILVNNLPTAK LTVESVDTVS NLLSCTIQKI 840 KSALQASIIS P |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 101 | 106 | RKKKKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015612621.1 | 0.0 | homeobox-leucine zipper protein ROC6 | ||||
Swissprot | Q7Y0V7 | 0.0 | ROC6_ORYSJ; Homeobox-leucine zipper protein ROC6 | ||||
TrEMBL | A0A0E0EU14 | 0.0 | A0A0E0EU14_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI09G12710.1 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1203 | 37 | 116 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00730.1 | 0.0 | HD-ZIP family protein |