PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI09G11270.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 428aa    MW: 45688.6 Da    PI: 7.1887
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI09G11270.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.83.9e-05259278120
                      EEETTTTEEESSHHHHHHHH CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                      ++Cp C k+F+r  n++ H+
  OMERI09G11270.1 259 FSCPVCFKTFNRYNNMQMHM 278
                      89*****************9 PP
2zf-C2H212.50.00045345365323
                      ETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                      C +Cgk F  k + ++H +++
  OMERI09G11270.1 345 CRKCGKAFAVKGDWRTHEKNC 365
                      *****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.64259286IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.4E-6259278IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.38259281IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280261281IPR007087Zinc finger, C2H2
SuperFamilySSF576672.8E-6325363No hitNo description
Gene3DG3DSA:3.30.160.603.6E-5330363IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035582343363IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.621343363IPR007087Zinc finger, C2H2
SMARTSM00355220369392IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MENPYYASFL KNHHRRYCFS TPPSPSPSPA GAYSSSASSS FPFFPTVGVT STTAATPTPS  60
APPSPPLREA LPLLSLTPAS RGGTTAAQER ARQRGEDCTD DDDGAEEEGA DEEDVPGSTP  120
GGGGDRHHQL RRRRAGRLFA DLNTKAAAGD PMDVEGSGSG CCAADADVTV ALHIGLPSPT  180
AAADLISGLS SAAAGRRSST ARRDEEEDEA EEEAGGASRD DDADAAAPLG FASTPIGRLN  240
KGQYWIPTPS QILIGPTQFS CPVCFKTFNR YNNMQMHMWG HGSQYRKGPE SLRGIQPTAM  300
LRLPCYCCAA GCRNNIDHPR AKPLKDFRTL QTHYKRKHGL KPFLCRKCGK AFAVKGDWRT  360
HEKNCGKLWY CLCGSEFKHK RSLKDHARAF GHGHGALGGA AALDDDDDGA VSDLDHDSSS  420
TAPAARSL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6269400.0EF626940.1 Oryza sativa (indica cultivar-group) WIP4 (WIP4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611033.10.0zinc finger protein WIP2
SwissprotQ9SVY11e-125ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A0E0ETE90.0A0A0E0ETE9_9ORYZ; Uncharacterized protein
STRINGOMERI09G11110.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58638170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-105C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]