PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI09G07780.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 360aa    MW: 37513.6 Da    PI: 4.9738
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI09G07780.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.81.1e-14106152354
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      r+h+e+ErrRR+riN  +++Lr+llP+      +K +Ka+ L +++e++k+L
  OMERI09G07780.1 106 RSHSEAERRRRQRINGHLARLRSLLPNT-----TKTDKASLLAEVIEHVKEL 152
                      78*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.066103152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-12106152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.73E-12106155No hitNo description
Gene3DG3DSA:4.10.280.102.8E-14107159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-14107157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.8E-14109158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550216.41E-5214261No hitNo description
Gene3DG3DSA:3.30.70.2603.0E-6214261No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MWEGGSHDAA AAQLLPWFVG EPAAAAVGGY GGCDVVGQGG GGVFGFGFEA AAPVVTRQQR  60
GGAAAAAAEG GGKPAVVSGL LGSLQAELGR VTAREIMDAK ALAASRSHSE AERRRRQRIN  120
GHLARLRSLL PNTTKTDKAS LLAEVIEHVK ELKRQTTAIA AAAAGDYHDN DEDDDDGVVG  180
RRSAAAQQLL PTEADELAVD AAVDAEGRLV VRASLCCEDR PDLIPDIARA LAALRLRARR  240
AEITTLGGRV RSVLLITADE QQQQHCDDVD DDEDGHRLLL LHGIDGAGAD DDDDDECAAS  300
HRRHECIATV QEALRGVMDR RAAASSGDTS SSGGAVVAGG GGGSIKRQRM NYGVHEQCSV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0050930.0AP005093.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1294_G06.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651269.11e-164transcription factor bHLH30
TrEMBLA0A0E0ES370.0A0A0E0ES37_9ORYZ; Uncharacterized protein
STRINGONIVA09G09550.11e-164(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19183898
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.12e-39bHLH family protein