PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI08G14850.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 271aa    MW: 28827.3 Da    PI: 9.7797
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI08G14850.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.11.2e-06218247230
                      HHHHHHHHHHHHHHHHHHH.HHHHCTSCCC CS
              HLH   2 rrahnerErrRRdriNsaf.eeLrellPka 30 
                      r +h++ E+rRR++iN+++ ++L + +  a
  OMERI08G14850.1 218 RSKHSATEQRRRSKINDSLhFKLHSTVCAA 247
                      899****************88999988775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.3E-5215247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MGLQGNKATH DFLSLYAAAA TATDYSPLPR HPDSKPPAPA PPPAQDFFLK THDFLPQVEK  60
RADQPPPPQP HAAATAEKQL LHHHALAAAG AFTISHAAAA AATATAVKQE PPFAPWCQPV  120
AAVDPRGHQW SLPFAARAVA VVSSRPQQQP PPPERKGGGG FMDAGSRSSG GAGFDDDDGH  180
AARREVSSSL KELTVRVEGK GGSCSGSAGT DQMPNTPRSK HSATEQRRRS KINDSLHFKL  240
HSTVCAANSV IEYIRTKAKF LQIIHLTLQN F
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1001830.0AK100183.1 Oryza sativa Japonica Group cDNA clone:J023030J22, full insert sequence.
GenBankHQ8588650.0HQ858865.1 Oryza sativa Japonica Group isolate UT1674 bHLH transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650492.11e-108transcription factor BIM2 isoform X2
TrEMBLA0A0E0EML20.0A0A0E0EML2_9ORYZ; Uncharacterized protein
STRINGOGLUM08G19830.11e-108(Oryza glumipatula)
STRINGOMERI08G14560.31e-108(Oryza meridionalis)
STRINGONIVA08G20800.11e-108(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.32e-07bHLH family protein