PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI08G11260.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NF-YB | ||||||||
Protein Properties | Length: 294aa MW: 33541.6 Da PI: 5.5262 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 71.7 | 1.2e-22 | 11 | 95 | 3 | 87 |
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvyl 87 ++d lP + + +i+k++lP + ++++da++++ ec +efi +++se+++ c re++kti+++ +l al +lGf +y+e++++ OMERI08G11260.1 11 KEDVSLPKSTMFKIIKEMLPPDVRVARDAQDLLVECCVEFINLLSSESNEVCSREDKKTIAPEHVLRALQDLGFREYIEEVQAAY 95 67999**************************************************************************998654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 5.4E-38 | 8 | 141 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.35E-33 | 12 | 140 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.6E-19 | 15 | 79 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MDPMDIVGKS KEDVSLPKST MFKIIKEMLP PDVRVARDAQ DLLVECCVEF INLLSSESNE 60 VCSREDKKTI APEHVLRALQ DLGFREYIEE VQAAYEHHKH DTLDSPKASK FTGVEMTEEQ 120 AVAEQQRMFA EARARMNNGA TKPKEPEPEA QQQTQQPPQP QLHPQPQQPL QPQLQLHPQP 180 QQQPSQLHPQ SQQTPQPQPQ VHSQPQQPPQ LQPQPQLLRQ PQLPQQLQPQ SQLPPQPQQP 240 PQLQLQSQLH PQPQQPPQLQ PQPQLHQQPQ LQRQPQAELQ SQSQPQTEHG LDSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_B | 2e-32 | 12 | 133 | 12 | 133 | Transcription Regulator NC2 beta chain |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF464902 | 0.0 | AF464902.1 Oryza sativa repressor protein (Dr1) mRNA, complete cds. | |||
GenBank | CT830130 | 0.0 | CT830130.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA058B22, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010235094.1 | 1e-108 | nuclear transcription factor Y subunit beta | ||||
Swissprot | P49592 | 2e-80 | NC2B_ARATH; Protein Dr1 homolog | ||||
TrEMBL | A0A0E0EL55 | 0.0 | A0A0E0EL55_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI08G11030.1 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5720 | 35 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23090.4 | 2e-80 | nuclear factor Y, subunit B13 |
Publications ? help Back to Top | |||
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