PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI08G04810.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 467aa MW: 47559.3 Da PI: 7.4494

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI08G04810.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.5	0.00056	362	389	22	54
HHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 22 eLrellPkaskapskKlsKaeiLekAveYIksL 54 L++l+ + +K + a++L +++eYIk L OMERI08G04810.1 362 ALQQLVSPF-----GKTDTASVLHETIEYIKFL 389 566666665.....89***************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.255	340	389	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.62E-10	352	409	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.3E-7	352	409	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.09E-4	352	393	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 467 aa Download sequence Send to blast
MADHQEMIHA AAAPAMYGGG GGGAAGGATT TTGSHGGGGD WWSAAVSSCS APAPETMQGF 60 GGWSAAVVAV DGGGNTSRSA AGNTASSESP GSLATGSSIT FQEPAGGGGG VADPAAIAVH 120 AQTVAGGGWN QQPFLDGSGF HGYMSSSRND HHTNHHHHHH IKTPSLMSHS SSNNSVMLQD 180 HHHDQNYQFL SNLGFELLSS PTSPYGGSGG GGGFRSSLLR SLTEPPAAAV AKPNNSPGFQ 240 QYHNHQHQPA MNLQPPAAAG REPLQFTNST AAPFWNPSSG FTVAADGAAL GGAGASPAQT 300 TPASLAAKRA LEGVGDSSSI ITKKAKADST PLKKSRTGTP SPLPTTFKAC VRKEKLGDRV 360 TALQQLVSPF GKTDTASVLH ETIEYIKFLH DQVGALSAPY LKNRQQVLHL KNSAGVDNDG 420 GGGGEATAAS KRDLTGRGLC LVPISSTFAV ASETPVDFWT PFGAAFR

Sequence ? help Back to Top

Protein Sequence Length: 467 aa Download sequence Send to blast

MADHQEMIHA AAAPAMYGGG GGGAAGGATT TTGSHGGGGD WWSAAVSSCS APAPETMQGF  60
GGWSAAVVAV DGGGNTSRSA AGNTASSESP GSLATGSSIT FQEPAGGGGG VADPAAIAVH  120
AQTVAGGGWN QQPFLDGSGF HGYMSSSRND HHTNHHHHHH IKTPSLMSHS SSNNSVMLQD  180
HHHDQNYQFL SNLGFELLSS PTSPYGGSGG GGGFRSSLLR SLTEPPAAAV AKPNNSPGFQ  240
QYHNHQHQPA MNLQPPAAAG REPLQFTNST AAPFWNPSSG FTVAADGAAL GGAGASPAQT  300
TPASLAAKRA LEGVGDSSSI ITKKAKADST PLKKSRTGTP SPLPTTFKAC VRKEKLGDRV  360
TALQQLVSPF GKTDTASVLH ETIEYIKFLH DQVGALSAPY LKNRQQVLHL KNSAGVDNDG  420
GGGGEATAAS KRDLTGRGLC LVPISSTFAV ASETPVDFWT PFGAAFR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012616	0.0	CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015648821.1	0.0	transcription factor bHLH112 isoform X2
TrEMBL	A0A0E0EIN4	0.0	A0A0E0EIN4_9ORYZ; Uncharacterized protein
STRING	ONIVA08G04680.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2216	37	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61660.3	9e-42	bHLH family protein