PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI07G15800.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 458aa    MW: 49034.5 Da    PI: 5.594
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI07G15800.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS360.62.3e-110704352374
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                       +lLl+cAeav+ ++l +a+ lL ++ elasp g++ +R+aayf  AL ar+++s  + y+ l+ ++ +  +s +   a+++++ +sP++kfsh
  OMERI07G15800.1  70 LSLLLRCAEAVAMDQLPEARDLLPEIAELASPFGSSPERVAAYFGDALCARVLSSYLGAYSPLALRPLAAAQSRRISGAFQAYNALSPLVKFSH 163
                      689******************************************************************999********************** PP

             GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189
                      +taNqaI +a++ge+rvH+iD+di+qGlQWp L++ LasRp +p slRiTg+g+    s + le+tg+rLa+fA++lg+pfef+++  k  +  
  OMERI07G15800.1 164 FTANQAIFQALDGEDRVHVIDLDIMQGLQWPGLFHILASRPTKPRSLRITGLGA----SLDVLEATGRRLADFAASLGLPFEFRPIEGKIGHVA 253
                      ******************************************************....9**************************766655555 PP

             GRAS 190 eleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres.. 279
                      +  +L   +  gEa++V++++  h l+d ++s +     +++l+ksl+Pk++++veq++ h s++Fl rf+eal+yysalfd+l  ++++++  
  OMERI07G15800.1 254 DAAALLGPRhhGEATVVHWMH--HCLYDVTGSDAG----TVRLLKSLQPKLITIVEQDLGH-SGDFLGRFVEALHYYSALFDALGDGAGAAEee 340
                      66666443358*********9..888888888888....**********************.899*******************5443333323 PP

             GRAS 280 .eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSa 372
                        er+ vEr+llg ei+n+va  g +r+ + + +e+W + l++aGF+pv+l  + a+qa+lll +++++gy++ ee+g+l lgWkd +L+++S+
  OMERI07G15800.1 341 aAERHAVERQLLGAEIRNIVAVGGPKRTGEVR-VERWGDELRRAGFRPVTLAGSPAAQARLLLGMYPWKGYTLVEEDGCLKLGWKDLSLLTASS 433
                      699***********************998887.9************************************************************ PP

             GRAS 373 Wr 374
                      W+
  OMERI07G15800.1 434 WE 435
                      *5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.47143415IPR005202Transcription factor GRAS
PfamPF035148.0E-10870435IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MLQGVLSRAP GGGADAAAMK AKRAADDEEE GGERERARGK RLAAEGKQGL VVVAGEEEEA  60
AAETRGLRLL SLLLRCAEAV AMDQLPEARD LLPEIAELAS PFGSSPERVA AYFGDALCAR  120
VLSSYLGAYS PLALRPLAAA QSRRISGAFQ AYNALSPLVK FSHFTANQAI FQALDGEDRV  180
HVIDLDIMQG LQWPGLFHIL ASRPTKPRSL RITGLGASLD VLEATGRRLA DFAASLGLPF  240
EFRPIEGKIG HVADAAALLG PRHHGEATVV HWMHHCLYDV TGSDAGTVRL LKSLQPKLIT  300
IVEQDLGHSG DFLGRFVEAL HYYSALFDAL GDGAGAAEEE AAERHAVERQ LLGAEIRNIV  360
AVGGPKRTGE VRVERWGDEL RRAGFRPVTL AGSPAAQARL LLGMYPWKGY TLVEEDGCLK  420
LGWKDLSLLT ASSWEPTDGD ADADVAVAGD THHENHGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-1567543624379Protein SCARECROW
5b3h_D1e-1567543624379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0038660.0AP003866.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1092_A07.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644982.10.0scarecrow-like protein 23
SwissprotQ9FHZ11e-171SCL23_ARATH; Scarecrow-like protein 23
TrEMBLA0A0E0ED860.0A0A0E0ED86_9ORYZ; Uncharacterized protein
STRINGOMERI07G16060.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137138122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.11e-155GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]