PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI06G22010.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 398aa    MW: 40794.9 Da    PI: 4.8916
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI06G22010.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.14.4e-13136189256
              AP2   2 gykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkklege 56 
                      +y+G r ++ +g+++AeIr     +   ++ r++lg+f taeeAa a++ a+  ++ge
  OMERI06G22010.1 136 KYRGARKRP-WGKYAAEIRIR---NtmgVKERVWLGTFATAEEAAWAYDTAATVIHGE 189
                      8********.**********5...445588**********************998886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.0E-24135197IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-17136196IPR016177DNA-binding domain
PROSITE profilePS5103220.653136196IPR001471AP2/ERF domain
SMARTSM003808.6E-26136202IPR001471AP2/ERF domain
PfamPF008471.5E-7136188IPR001471AP2/ERF domain
CDDcd000185.23E-24136196No hitNo description
PRINTSPR003672.5E-9137148IPR001471AP2/ERF domain
PRINTSPR003672.5E-9162178IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MGRPVKQKTT TWLVELLREY CQRAAAQATA GNGAVAAAAA VEGEINTDGL AALAAEAEGF  60
AAAAAAVEGE IDTDGLAALA AEAEGFAAAN GEGLVAPAVE GEGEGFVGAP VVEGEEGFAA  120
EPPVAVAAAA AAAERKYRGA RKRPWGKYAA EIRIRNTMGV KERVWLGTFA TAEEAAWAYD  180
TAATVIHGEK ATTNFPRAPL PPATTPVMRS MLVFFGIAHL VRSLVPRARG PRGRGGGAGG  240
RGRSRRRRAA KASAAAAAPS APASEAPPPP PSSALVPEPE LQVQGGRGER GRGRGRGRGG  300
APAPAPAPAP APANQAIFQP MIIPPGGSVV APDDFLLPAI SDDELVLPHK KPKLLGVYTP  360
PDSPEQFVME FFADLGDDDD ILSSSFWQDP AGDGEDTQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-171361961472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1289298RGRGRGRGRG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0053860.0AP005386.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0019I19.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0E4300.0A0A0E0E430_9ORYZ; Uncharacterized protein
STRINGOMERI06G20400.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1823699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.11e-10ERF family protein