PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI06G18730.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HSF

Protein Properties

Length: 314aa MW: 32873.8 Da PI: 8.27

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI06G18730.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	90.6	1.8e-28	13	139	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT..................... CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks..................... 74 F+ k+y+++ed+ ++ +i w + +nsfvv d+ f++++Lp +Fkh+nf+SFvRQLn+Y + ++ ++s++ OMERI06G18730.1 13 FVWKTYRMVEDPGTDGVIGWGKGNNSFVVADPFVFSQTLLPAHFKHNNFSSFVRQLNTYVSLVTPSSISSSHHtpplsaihimlpwilsgtqlk 106 9********************************************************7665555555544489999999999998887 PP .....XTTSEEEEESXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 75 .....kekiweFkhksFkkgkkellekikrkks 102 +++ weF+h sF +g+++ll++i r+ s OMERI06G18730.1 107 gfrkvDPDRWEFAHASFLRGQTHLLRNIVRRGS 139 7765449*********************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	4.4E-40	9	137	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	3.6E-34	10	137	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	3.99E-28	10	137	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	7.8E-12	13	36	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	6.3E-25	13	137	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	7.8E-12	51	63	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	7.8E-12	64	76	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MAAAAGGGGA APFVWKTYRM VEDPGTDGVI GWGKGNNSFV VADPFVFSQT LLPAHFKHNN 60 FSSFVRQLNT YVSLVTPSSI SSSHHTPPLS AIHIMLPWIL SGTQLKGFRK VDPDRWEFAH 120 ASFLRGQTHL LRNIVRRGSA AASGGGGGGG GGKHRDATAD GGGGVGDEDM TMVATEVVRL 180 KQEQRTIDDR VAAMWRRVQE TERRPKQMLA FLLKVVGDRD KLHRLVGGGG GNGNGAATAA 240 AAVDSNGFAD AARAGCGEKR ARLLLDGDNT GAFGPDAVDF AGFYTGADMF PDVAVDATAG 300 SAGCSFAFGV DSGY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	4e-19	4	137	20	129	Heat shock factor protein 1
5d5v_B	4e-19	4	137	20	129	Heat shock factor protein 1
5d5v_D	4e-19	4	137	20	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003682	0.0	AP003682.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0427B07.
GenBank	AP014962	0.0	AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015641665.1	1e-138	heat stress transcription factor C-2b
Swissprot	Q0DBL6	1e-139	HFC2B_ORYSJ; Heat stress transcription factor C-2b
TrEMBL	A0A0E0E2T7	0.0	A0A0E0E2T7_9ORYZ; Uncharacterized protein
STRING	OMERI06G17240.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4471	34	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24520.1	1e-50	heat shock transcription factor C1