PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI05G20470.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 513aa    MW: 55760.9 Da    PI: 6.7146
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI05G20470.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM85.97.5e-27161533128
              NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.....kvkaeekewyfFskrdkkyatgkrknratk..sgyWk.atg 87 
                      +GfrF+P++ e v +yL ++++g++   + +i   ++y++eP++L  +        ++e+ wyf s+rd+ky++gkr++r+t+  +g+Wk +tg
  OMERI05G20470.1  16 MGFRFKPREAEAVEYYLLPRLQGRPPVPNPAIVVENVYEFEPERLInEkcnggVGGEGEEGWYFLSPRDRKYRNGKRPSRSTEdkAGRWKaSTG 109
                      7************************7666779999**********733455532233777********************887679****5566 PP

              NAM  88 k...dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      k   + ++++  g ++ + ++Lv++kg  ++ +kt+W+m e+++
  OMERI05G20470.1 110 KtegKDPITECYGGVKFCVTSLVYFKGPVKTEKKTKWLMREFTI 153
                      6444567888799999***********99999**********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100533.02814189IPR003441NAC domain
PfamPF023655.4E-1516152IPR003441NAC domain
SuperFamilySSF1019413.79E-2916189IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MAGLGKGESI GGGGEMGFRF KPREAEAVEY YLLPRLQGRP PVPNPAIVVE NVYEFEPERL  60
INEKCNGGVG GEGEEGWYFL SPRDRKYRNG KRPSRSTEDK AGRWKASTGK TEGKDPITEC  120
YGGVKFCVTS LVYFKGPVKT EKKTKWLMRE FTIPHFENKL DKTAAAGGGA SSSNQRQLDQ  180
YVLCRIYTSP KKGADDGEQA EVVRGGGGGG EDIDEWAEAC AVFDLGPETA EGSDNADAAA  240
AAEGDMRSAK QAGKRPVAAA AVAEQPSKRP WLPPSPSTPC DGGPSQAMGN RQVPMQGLSL  300
MHNFPPPPPP TFCGHAPLQQ GFPVHNNHAQ MRWPPMQHNC MPSPAHSIQP QPVQRRPVLV  360
GQAPPQRRPV HAGHALVHGN CQATPQRRPV HHVGGHAPVL QAKWTPVHIA QAPMQQLPFD  420
DWVFDPFDDP PPPMQQLPVM MNTYQAQALM QLPPMMSNDQ PAMMHAGELQ APMQLLPATT  480
HGGEVQAPMP LNVYEEEQRS SQEDGGQCTN AEG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-161718918168Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1306030.0AC130603.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone B1130G10, complete sequence.
GenBankAC1324850.0AC132485.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0022D06, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881431.11e-143pollen-specific leucine-rich repeat extensin-like protein 1
TrEMBLA0A0E0DTW40.0A0A0E0DTW4_9ORYZ; Uncharacterized protein
STRINGOMERI05G19660.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143612024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15510.12e-19NAC domain containing protein 2