PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI04G13510.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 577aa MW: 58861.7 Da PI: 7.3828

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI04G13510.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12	0.00063	60	81	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +Cp Cgk+F + + H+r+H OMERI04G13510.1 60 TCPECGKVFMSDKAMYGHLRSH 81 8*******************99 PP
2	zf-C2H2	13.3	0.00025	333	355	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k+Fs++ L H H OMERI04G13510.1 333 YECSECHKTFSTHQALGGHVAAH 355 99***********9998887666 PP
3	zf-C2H2	11.5	0.00095	443	465	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C+++F++ L H+r+H OMERI04G13510.1 443 HQCLRCPMVFPTGQALGGHMRKH 465 79********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	0.0066	59	81	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.887	59	86	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.24E-8	60	81	No hit	No description
PROSITE pattern	PS00028	0	61	81	IPR007087	Zinc finger, C2H2
Pfam	PF13912	1.6E-5	61	81	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.24E-8	328	355	No hit	No description
SMART	SM00355	0.02	333	355	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.822	333	360	IPR007087	Zinc finger, C2H2
Pfam	PF13912	1.6E-7	333	357	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	335	355	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.12	443	465	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	6.0E-6	443	465	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	445	465	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 577 aa Download sequence Send to blast
MDSRGQAYYH RAAAAAAAAA AGDATDGEEP AAELAPKAVR SKKKLAVEAQ GGAAVRDDLT 60 CPECGKVFMS DKAMYGHLRS HPLRKHKGAA RLAAVAAAAA DDASVAAGVK PRPWKVPRTK 120 EEAELGDDRH PGRSPVTGKR GRPASSASSS GSAPAPAPPA SSRLQLVITE EEEAAMTLLD 180 IASGRSLDHQ PTQPAHVAAA ALPAPASHQM PSVDVEQGAL AVAEHRTWEA EKPALVEHVF 240 GIVKEHVAAV AADAEPQSPE AKTPVKLGPV TDQAVPVPGD KNDGHADMPV SPVGGTTKKP 300 LKRRLQDVET KHPTGAPPPP VRRIPSPASK RKYECSECHK TFSTHQALGG HVAAHKRQKK 360 SCAEQQQEAV AAAAQVARHN FLAHQRPAGV VVVVDATVVA AAGGGIAIGP LGEEGLVGPP 420 PPPSPPPPPP APAPAPAPAP QQHQCLRCPM VFPTGQALGG HMRKHFLEAK EQEQLLAIAI 480 ANASAAPAPP PMMANDAPTP PPPMANGAGP VPPPIAVAPP PAPPIAGAAP PPPMANGAAA 540 AAPPGGNAAP PAGPQPDVNM FDLNELPNED AGENQQP

Sequence ? help Back to Top

Protein Sequence Length: 577 aa Download sequence Send to blast

MDSRGQAYYH RAAAAAAAAA AGDATDGEEP AAELAPKAVR SKKKLAVEAQ GGAAVRDDLT  60
CPECGKVFMS DKAMYGHLRS HPLRKHKGAA RLAAVAAAAA DDASVAAGVK PRPWKVPRTK  120
EEAELGDDRH PGRSPVTGKR GRPASSASSS GSAPAPAPPA SSRLQLVITE EEEAAMTLLD  180
IASGRSLDHQ PTQPAHVAAA ALPAPASHQM PSVDVEQGAL AVAEHRTWEA EKPALVEHVF  240
GIVKEHVAAV AADAEPQSPE AKTPVKLGPV TDQAVPVPGD KNDGHADMPV SPVGGTTKKP  300
LKRRLQDVET KHPTGAPPPP VRRIPSPASK RKYECSECHK TFSTHQALGG HVAAHKRQKK  360
SCAEQQQEAV AAAAQVARHN FLAHQRPAGV VVVVDATVVA AAGGGIAIGP LGEEGLVGPP  420
PPPSPPPPPP APAPAPAPAP QQHQCLRCPM VFPTGQALGG HMRKHFLEAK EQEQLLAIAI  480
ANASAAPAPP PMMANDAPTP PPPMANGAGP VPPPIAVAPP PAPPIAGAAP PPPMANGAAA  540
AAPPGGNAAP PAGPQPDVNM FDLNELPNED AGENQQP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	297	304	KKPLKRRL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL606441	0.0	AL606441.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0089K21, complete sequence.
GenBank	AP014960	0.0	AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025880741.1	0.0	zinc finger protein 628-like
TrEMBL	A0A0E0DF77	0.0	A0A0E0DF77_9ORYZ; Uncharacterized protein
STRING	OMERI04G12700.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18193	9	9