PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI04G12470.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 172aa    MW: 17339.3 Da    PI: 8.5164
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI04G12470.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.000133759123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C +C++ F+++  L  H++ H
  OMERI04G12470.1 37 FSCCYCPRKFRSSQALGGHQNAH 59
                     89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.0763764IPR007087Zinc finger, C2H2
PROSITE patternPS0002803959IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MEFGMVEDAA AAAAAGEEGL TLSLSLQPSP PRFQALFSCC YCPRKFRSSQ ALGGHQNAHK  60
LQRNLARRGR EAAASLAAAA AAAAAAASSG DQQQGRTTAV LAGGESAPQP PPAAARAADL  120
DAGVWGGAGM RGRPAHHHRM MQGGYSSGGS SAAGGRGNGE LADEMIDLSL KL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ9999980.0GQ999998.1 Oryza sativa Japonica Group C2H2 zinc finger malformed spikelet (MLS) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635414.12e-62homeobox even-skipped homolog protein 2
TrEMBLA0A0E0DES21e-116A0A0E0DES2_9ORYZ; Uncharacterized protein
STRINGOMERI04G11530.11e-117(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69922646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.11e-13zinc finger protein 2