PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G32840.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 652aa    MW: 68157.5 Da    PI: 7.248
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G32840.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2392e-12317373155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV++++++gr++A+++d  ++  g  rk  + g ++ +e+Aa+a++ a++k++g
  OMERI03G32840.1 317 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDMEEKAARAYDLAALKYWG 373
                      78*******************77776664346655.77******************98 PP
2AP247.64.3e-15416467155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV+++++ grW A+I  +s    +k  +lg+f t eeAa+a++ a+ k++g
  OMERI03G32840.1 416 SIYRGVTRHHQPGRWQARIGRVSG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 467
                      57****************999754...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.2E-9317373IPR001471AP2/ERF domain
CDDcd000181.21E-16317381No hitNo description
SuperFamilySSF541712.42E-14317382IPR016177DNA-binding domain
PROSITE profilePS5103217.359318381IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-12318382IPR001471AP2/ERF domain
SMARTSM003801.3E-22318387IPR001471AP2/ERF domain
PRINTSPR003673.8E-6319330IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-18416476IPR016177DNA-binding domain
PfamPF008475.6E-10416467IPR001471AP2/ERF domain
CDDcd000185.55E-23416477No hitNo description
PROSITE profilePS5103218.966417475IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-18417475IPR001471AP2/ERF domain
SMARTSM003801.1E-32417481IPR001471AP2/ERF domain
PRINTSPR003673.8E-6457477IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007276Biological Processgamete generation
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0042127Biological Processregulation of cell proliferation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 652 aa     Download sequence    Send to blast
MASGNSSSSS GSMAATAGGV GGWLGFSLSP HMATHCAGGF DDVGHHHHHH HHHVHQHQHQ  60
QQQQQHGGGL VYNPAAVSSS FYYGGGHDAV VTSAAGGGSY YGAGFSSMPL KSDGSLCIME  120
ALRGGDQEQQ GVVVSASPKL EDFLGAGPAM ALSLDNSAFY YGAHGHHQGH AQDGGAVGGD  180
PHHGGGGGFL QCAVIPGAGA GHDAAYAHAA LVHDQSAAAM AAGWAAMHGG GYDIANAADD  240
VCAAGPIIPT GSHLHPLTLS MSSAGSQSSC VTGQAAAAGE PYMAMDAVSK KRGGADRAGQ  300
KQPVHRKSID TFGQRTSQYR GVTRHRWTGR YEAHLWDNSC KKEGQTRKGR QGGYDMEEKA  360
ARAYDLAALK YWGPSTHINF PLEEYQEELE EMKNMSRQEY VAHLRRKSSG FSRGASIYRG  420
VTRHHQPGRW QARIGRVSGN KDLYLGTFST QEEAAEAYDV AAIKFRGLNA VTNFDITRYD  480
VDKILESNTL LPGELARRKG KVGDGGAAAV ADAAAALVQA GNVAEWKMAA AALPAAARTE  540
QQQHGHGGHQ HHDLLPTDAF SVLQDIVSTV DAAGAPHMSM AAASLGNSRE QSPDRGVGVL  600
ATLFAKPAAA SKMYSPVPLN SWASPSPAVS SVPARAGVSI AHLPMFAAWT DA
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00088SELEXTransfer from AT4G37750Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2417120.0AK241712.1 Oryza sativa Japonica Group cDNA, clone: J065197H24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879550.10.0AP2-like ethylene-responsive transcription factor CRL5 isoform X2
SwissprotQ84Z021e-160CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A0E0D7H10.0A0A0E0D7H1_9ORYZ; Uncharacterized protein
STRINGOMERI03G32160.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94838133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-123AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]