PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G25360.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 381aa    MW: 39530.1 Da    PI: 7.3446
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G25360.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.21.9e-15188234455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       h ++Er+RR++iN++f eL +++P +     kK++Ka+iL  Av+Y+k+Lq
  OMERI03G25360.1 188 EHIIAERKRREKINQRFIELSTVIPGL-----KKMDKATILSDAVRYVKELQ 234
                      699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.361184233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-18188248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.0E-13188234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-19188244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.26E-16189237No hitNo description
SMARTSM003533.3E-16190239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MEDSSLFMEW AMETLQHLHP LPATPPPAGG GYAGDNATFP SLQALRESSV SQNGMAPPEP  60
TAHEGHRASN SWSSGDTDSV SGGGGGAVME HDGWSTSPNS VRCAPGGGGG LWPVSWNFSS  120
AMTQPCNDQA TPPNPPTTTR ARYGGGGGVR YLPAAVSPSP SAQTRRASSK GNGGGGSGSS  180
SAAPYVQEHI IAERKRREKI NQRFIELSTV IPGLKKMDKA TILSDAVRYV KELQEKLNEL  240
EQHQNGGVES AILLKKPCIA ASSSDGGCPA ASSAVAGSSS SGTARSSLPE IEVKISHGNV  300
MVRIHGENNG KGSLVRLLAA VEGLHLGITH TNVMPFSACT AVITIMAKVE DGVSVTAEDI  360
VGKLNTALQQ NSRNSARETK S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1192197ERKRRE
2193198RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1071900.0AK107190.1 Oryza sativa Japonica Group cDNA clone:002-125-A03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629952.10.0transcription factor NAI1
TrEMBLA0A0E0D4D40.0A0A0E0D4D4_9ORYZ; Uncharacterized protein
STRINGOMERI03G24640.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-29bHLH family protein