PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI03G23080.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

GRAS

Protein Properties

Length: 734aa MW: 83654.5 Da PI: 6.1266

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI03G23080.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	334.8	1.6e-102	354	726	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 l++lL++cA+a+s ++++la+ +L+ ++++asp+gd qRla +++ L rl++ +s++y+++ +++ + +++ l+++++ ++P+l+ s OMERI03G23080.1 354 LRTLLINCAQAISVSNHSLASDILKIIRHHASPTGDDSQRLALCLAYCLDIRLTGIGSQIYHKFITKRRN---VKDILKVFHVCLSTCPFLRAS 444 6789*******************************************************999998887...9**************** PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186 h N++I++ +g+ +vHiiDf+i G+QWp+L+++La+ ++gpp+lRiTg++ pesg + +++g rLa++A+++++pfe++ + ++++ OMERI03G23080.1 445 HYFSNRTIVDVSKGKPQVHIIDFGICFGFQWPSLFEELAKIEDGPPKLRITGIELPESGfrPYARSKNIGLRLADYAKTFNIPFEYQHISSNKW 538 ******************************************************999999********************9999 PP GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280 e+l++e+++++++E+l+Vn++++++ l de+vs++s+r++vL+ ++ ++Pkv+v + +++ + Fl+rf e +++y +lfd+l++++pr++e OMERI03G23080.1 539 EALSPEDFNIEKDEVLIVNCIYRMKDLGDETVSINSARSRVLNKIRMMKPKVFVQGVLNGSYGVPFFLTRFKEVMYHYNSLFDMLDKNIPRDNE 632 ******************************************************************************************** PP GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +r+ +Er + + nv+aceg er+er e+++kW+ r +aG+ ++pl+ ++ + + ++rk + + + v+ee+++lvlgWk+r L++ S W+ OMERI03G23080.1 633 TRMIIERDIYQYIMLNVIACEGPERIERPESYKKWKVRNLKAGLVQLPLNPAIVRETQDMVRKGYHKDFLVDEEDQWLVLGWKGRILYASSTWQ 726 ****999999**********************************************9888***********************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	57.315	328	706	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.5E-100	354	726	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 734 aa Download sequence Send to blast
MGSDDNKRFD DFHVITNEPG SDAYSNEESI NLVSESNDSE LFLPPPSPMN YHAPLPTVSE 60 KDSYIAPSTS FCSKICNPQL YVDGGNGTAD WCQTSGGDYP EKSSINSDIT LSYIDKILMQ 120 EDIDDRGNED TALQAMEEPF YELLGQKYPA FPQQQPLCVC DHLQNLSANT DKSNGHSCNT 180 CSVTRMTNIS SSMNSNGNFQ GFQFPWNLSS ITRETEQFTH HSNRMVVGLK VDGLSISEKP 240 SQDNCSLQID EHYMRKDPLF EVHDRKSYPC IEDLDLLEGR SNKQYAIYYD EPIRDEMFDK 300 VLLCSDHKPV DEGVSLSRAM TNNSSKSSQI GQGKTSARRK TTGKRIQKRD VVDLRTLLIN 360 CAQAISVSNH SLASDILKII RHHASPTGDD SQRLALCLAY CLDIRLTGIG SQIYHKFITK 420 RRNVKDILKV FHVCLSTCPF LRASHYFSNR TIVDVSKGKP QVHIIDFGIC FGFQWPSLFE 480 ELAKIEDGPP KLRITGIELP ESGFRPYARS KNIGLRLADY AKTFNIPFEY QHISSNKWEA 540 LSPEDFNIEK DEVLIVNCIY RMKDLGDETV SINSARSRVL NKIRMMKPKV FVQGVLNGSY 600 GVPFFLTRFK EVMYHYNSLF DMLDKNIPRD NETRMIIERD IYQYIMLNVI ACEGPERIER 660 PESYKKWKVR NLKAGLVQLP LNPAIVRETQ DMVRKGYHKD FLVDEEDQWL VLGWKGRILY 720 ASSTWQPNDS GDSD

Sequence ? help Back to Top

Protein Sequence Length: 734 aa Download sequence Send to blast

MGSDDNKRFD DFHVITNEPG SDAYSNEESI NLVSESNDSE LFLPPPSPMN YHAPLPTVSE  60
KDSYIAPSTS FCSKICNPQL YVDGGNGTAD WCQTSGGDYP EKSSINSDIT LSYIDKILMQ  120
EDIDDRGNED TALQAMEEPF YELLGQKYPA FPQQQPLCVC DHLQNLSANT DKSNGHSCNT  180
CSVTRMTNIS SSMNSNGNFQ GFQFPWNLSS ITRETEQFTH HSNRMVVGLK VDGLSISEKP  240
SQDNCSLQID EHYMRKDPLF EVHDRKSYPC IEDLDLLEGR SNKQYAIYYD EPIRDEMFDK  300
VLLCSDHKPV DEGVSLSRAM TNNSSKSSQI GQGKTSARRK TTGKRIQKRD VVDLRTLLIN  360
CAQAISVSNH SLASDILKII RHHASPTGDD SQRLALCLAY CLDIRLTGIG SQIYHKFITK  420
RRNVKDILKV FHVCLSTCPF LRASHYFSNR TIVDVSKGKP QVHIIDFGIC FGFQWPSLFE  480
ELAKIEDGPP KLRITGIELP ESGFRPYARS KNIGLRLADY AKTFNIPFEY QHISSNKWEA  540
LSPEDFNIEK DEVLIVNCIY RMKDLGDETV SINSARSRVL NKIRMMKPKV FVQGVLNGSY  600
GVPFFLTRFK EVMYHYNSLF DMLDKNIPRD NETRMIIERD IYQYIMLNVI ACEGPERIER  660
PESYKKWKVR NLKAGLVQLP LNPAIVRETQ DMVRKGYHKD FLVDEEDQWL VLGWKGRILY  720
ASSTWQPNDS GDSD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	6e-40	358	726	8	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012611	0.0	CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024313379.1	0.0	scarecrow-like protein 9
TrEMBL	A0A0E0D3J2	0.0	A0A0E0D3J2_9ORYZ; Uncharacterized protein
STRING	OMERI03G22530.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11788	26	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-147	GRAS family protein