PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G37660.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 453aa    MW: 47452.2 Da    PI: 8.974
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G37660.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH361.2e-11387432655
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++Er RR ri +++ +L++l+P+     +k  + +++L  Av YIk+Lq
  OMERI01G37660.1 387 SIAERERRTRISKRLKKLQDLVPNM----DKQTNTSDMLDIAVTYIKELQ 432
                      689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.941381431IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.28E-14384441IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.14E-12385436No hitNo description
Gene3DG3DSA:4.10.280.101.2E-14386442IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-9387432IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-12387437IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MCTRIVGVAP STSPFPSQVG PITTTPRPPR PAEAKQKPKP KPQPAKPSPP PPPPPPTTNT  60
TTAASPEMNR MTAPHGGMPP PPMPAAGGLA RYGSAPGSLL ASIADSVIRG GGVDQLHHQH  120
QLLPPPPPPQ TQQQQQMVGR YFSAESSGLT SCESSCRTTT TTSTAAADVG RHPLERAYGG  180
SGEIHVDASS AAAGVPLFRH SSSPAGLLSR LMADPHGNGM AATRGMGGYS GGGGDAGAMA  240
HRRLSSQWSF SRQDLPQISE MGGLIPDIGE SIVTGGCNSS SDGTGHGAQS SSFLSSRNFS  300
MSSWDDTNSI MFSPPSSSKK ARVAAAAAAG NHGDDMVSSF SNIDSQFGLS KQSSLEMAGM  360
DDFLQLQPDS VACRARAKRG CATHPRSIAE RERRTRISKR LKKLQDLVPN MDKQTNTSDM  420
LDIAVTYIKE LQGQVEKLKH DQANCTCSGK HDC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1057130.0AK105713.1 Oryza sativa Japonica Group cDNA clone:001-201-E12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613853.10.0transcription factor bHLH128
TrEMBLA0A0E0CBN00.0A0A0E0CBN0_9ORYZ; Uncharacterized protein
STRINGOMERI01G37120.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP70713752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.12e-52bHLH family protein