PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G06280.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 407aa    MW: 43847.5 Da    PI: 10.1174
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G06280.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.25.3e-07185211430
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC CS
              HLH   4 ahnerErrRRdriNsafeeLrellPka 30 
                       h + Er+RR+++N +f  L+ +lP+ 
  OMERI01G06280.1 185 QHTMSERKRREKLNGSFVALKAVLPPG 211
                      599**********************94 PP
2HLH36.11.1e-11256302455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       h + Er+RR+++N +f  L+ +lP+       K +K +iL +A eY+ksL+
  OMERI01G06280.1 256 QHTMSERKRREKLNGSFVALKAVLPPG-----SKKDKTSILIRAREYVKSLE 302
                      599**********************95.....4999**************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.83E-5179210No hitNo description
PROSITE profilePS5088810.061181232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.03E-8181235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-6183213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-4185211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.29187239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.15E-12250306No hitNo description
SuperFamilySSF474594.45E-16252320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.227252301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-12254300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-9256302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-12258307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:1.20.5.1701.2E-4301321No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MHLSMDDDDD QSAVYGAAMV DDLLTPSPST HHAVAAAAGS FPSSSSSSAS FRSASVSYSP  60
DTSSSAAAAA ATGFYPELSS QVAPLLPPPP LVRNEPQPGR YTAGLPPPPP PPVTGGAFRR  120
YARHLGPRRA SKPGACGQRM FKTAMSVLAN MHVAATYRRQ YYYQQAAAAA AAEAAPALPS  180
DNQLQHTMSE RKRREKLNGS FVALKAVLPP GSKTAMSVLA NMHVAATYRR QYYYQQAAAA  240
AAAEAAPALP SDNQLQHTMS ERKRREKLNG SFVALKAVLP PGSKKDKTSI LIRAREYVKS  300
LESKLSELEE KNRELEARLS TRPAAKNDKG ETAAPPEAGG EVKREDPVAS SPNLPPRRFP  360
SMYAYVESLA TKWRERERGD RVPPWTGGAD RIYAAELHLR PCRLAPG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1260265ERKRRE
2261266RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0034170.0AP003417.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0498B01.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880866.16e-83putative transcription factor bHLH041
TrEMBLA0A0E0BYK60.0A0A0E0BYK6_9ORYZ; Uncharacterized protein
STRINGOMERI01G06350.11e-180(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29003182
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.11e-13bHLH family protein