PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G05820.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 507aa    MW: 51861.9 Da    PI: 6.8302
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G05820.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.81.3e-29239298159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      ++Dg++WrKYGqK  kg+++pr+YYrCt a +Cpv+k+v+r+a+d +++++tYeg+H h+
  OMERI01G05820.1 239 MNDGCQWRKYGQKISKGNPCPRAYYRCTVApNCPVRKQVQRCADDMSILITTYEGTHSHP 298
                      58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-31224300IPR003657WRKY domain
SuperFamilySSF1182903.4E-27232300IPR003657WRKY domain
PROSITE profilePS5081127.772234300IPR003657WRKY domain
SMARTSM007746.6E-36239299IPR003657WRKY domain
PfamPF031062.1E-26240298IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MDVVVESPPV RDEKKVDVAA IGGAPPIVFE SFAPSTLRDS TIIKKEEKME AAKAEMGEVR  60
EENERLKTML TRIVSDYKSL HTHFLDVVKV KEQTAAELAG DDDDEPDDLV SLSLCTRPNA  120
AAARRKGHGR TSSSGGGGGD DGRLSLGLSC ARDGVASDDD DDKQASLRAL PPMPVLNLSS  180
DSSGDAAGAG AGEPTQPNKA SRSSSGGGGG DGADDEVLQQ QQAKKARVSV RVKCDTPTMN  240
DGCQWRKYGQ KISKGNPCPR AYYRCTVAPN CPVRKQVQRC ADDMSILITT YEGTHSHPLP  300
PPAAAMASTT SAAAAMLTSG STTSAMHGGG GVHHHLPFAS AVGGGGLLGP TTISTATSCP  360
TVTLDLTAPH SLLHPSSASP YAAAAAAGYE SSRVLPAAWS SGYLAYGGAA AAQPYYAKGV  420
APSPFGSHHF GVMGMAAARP APEQLFGGQT TSPYLQRAIG GGGGVAPAAV TDTIAKAITS  480
DPSFQSVLAA AITSYMGRGG GAAAPNK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-21226301175WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1223232KKARVSVRVK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2892400.0AK289240.1 Oryza sativa Japonica Group cDNA, clone: J100075H09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625260.10.0probable WRKY transcription factor 72
TrEMBLA0A0E0BYD50.0A0A0E0BYD5_9ORYZ; Uncharacterized protein
STRINGOMERI01G05870.20.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120812938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.12e-43WRKY DNA-binding protein 72