PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G04960.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 499aa    MW: 52417.2 Da    PI: 6.1782
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G04960.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.31.3e-31263318156
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                      k+r++W+peLH+rFv+a++ LGG+++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  OMERI01G04960.1 263 KARRCWSPELHRRFVNALQILGGAQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 318
                      68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.554260320IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.4E-28261321IPR009057Homeodomain-like
SuperFamilySSF466893.29E-17261321IPR009057Homeodomain-like
TIGRFAMsTIGR015572.9E-26263318IPR006447Myb domain, plants
PfamPF002491.1E-6265316IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009266Biological Processresponse to temperature stimulus
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010452Biological Processhistone H3-K36 methylation
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:1903507Biological Processnegative regulation of nucleic acid-templated transcription
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MASSSSDLTL DDHHHLTAAA AASGQATQKL QEFLSRLEEE RLKIDAFKRE LPLCMQLLNH  60
AMEAYRQQLE AYQMGSQHGA AAARAPLVLE EFIPVKNIGI DVVAADKAAA AAGGNSVSSE  120
KASWMVSAQL WNAPASAAAA DTAAKGPQTP KEHSEHHPLD TSPKLITALD GGGGGGAFLP  180
FSKDNAMGDG SAAAAAALPE LALAPAEKAA DAITIAAGEV DRKPYAHDNG VVARSREAQN  240
GGKPPSTPPD GQAVPPPPQP HRKARRCWSP ELHRRFVNAL QILGGAQVAT PKQIRELMKV  300
DGLTNDEVKS HLQKYRLHTR RPMPSPAPPT AATPQLVVLG GIWVPPEYAT QAAGPAIYGA  360
HPATQPHYTA AVAAQEYYHH HHHHLQHHPA AAALVHHRAV APPPPLPPQQ QLAPPYSAKS  420
SASARLGSTD SDGRGSGGAA AAGAGRDMSE SIEEKGEGEE REDDDEMAAT NNAHAVDDDD  480
DDDEINTTTT TTSAGAINY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-13263316255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-13263316255Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-13263316154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-13263316154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-13263316154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-13263316154Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-13263316255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-13263316255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-13263316255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-13263316255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-13263316255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-13263316255Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play a role in regulatory networks controlling development and metabolism. {ECO:0000250|UniProtKB:Q6Z869}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00261DAPTransfer from AT2G03500Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1098080.0AK109808.1 Oryza sativa Japonica Group cDNA clone:002-147-G07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631343.10.0transcription factor NIGTH1-like isoform X1
SwissprotQ5VRW20.0NOH1_ORYSJ; Transcription factor NIGTH1
TrEMBLA0A0E0BXZ40.0A0A0E0BXZ4_9ORYZ; Uncharacterized protein
STRINGOMERI01G04970.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97733338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.15e-40G2-like family protein
Publications ? help Back to Top
  1. Kamrul Huda KM, et al.
    Salinity and drought tolerant OsACA6 enhances cold tolerance in transgenic tobacco by interacting with stress-inducible proteins.
    Plant Physiol. Biochem., 2014. 82: p. 229-38
    [PMID:24992889]