PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM12G19530.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 298aa    MW: 31130.7 Da    PI: 10.1516
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM12G19530.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH438.1e-14122168455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      ahn  E+rRR +i ++f +L++l+P +      K + a++L ++++Y+ksLq
  OGLUM12G19530.1 122 AHNLTEKRRRFKITERFRTLQRLVPGC-----DKSNQASTLDQTIQYMKSLQ 168
                      8*************************9.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.986118167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-16122181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-17122175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-11122168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-13124173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.93E-12124172No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MGTTTTTLLP EQPLVDDHHL PAAAAAAAAA PPSEEEMAAW LYPIVSGHEV AGGEWRSPEA  60
QDDRRAAPAP EKKQMEKMPA AASPTTTMNK DETSDDSGER KKKKASSAAG KASKHHHAAA  120
GAHNLTEKRR RFKITERFRT LQRLVPGCDK SNQASTLDQT IQYMKSLQHQ LKAMSVVGSL  180
PALLYPAAVH PQSYMHPPPA PPSVAGAAPP VTMPMHPGMV LAAPPPGAAP PPGPPAMVPF  240
GAMLPYPPYP AVLLPPPAAA TLYGRPPAAA PGVAARRHGS SGGGRISKSS SSSLCKKL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126131EKRRRF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126201e-162CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619315.14e-89transcription factor APG
TrEMBLA0A0E0BUV30.0A0A0E0BUV3_9ORYZ; Uncharacterized protein
STRINGOGLUM12G19530.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62832452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.21e-14phytochrome interacting factor 3