PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM12G19510.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 326aa    MW: 33734.7 Da    PI: 10.3495
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM12G19510.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.52.8e-14146193455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      ahn  E+rRR +i ++f +L++l+P +    + K + a++L ++++Y+ksLq
  OGLUM12G19510.1 146 AHNLTEKRRRFKITERFRTLQRLVPGC----DNKSNQASTLDQTIQYMKSLQ 193
                      8*************************9....89******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.41E-17141200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.037142192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.34E-14146197No hitNo description
Gene3DG3DSA:4.10.280.101.6E-17146199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-12146193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.8E-13148198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MRQGGGGGAC SFNQPPPLLP PAGIIVPGTT TTTLLPEQPV VDDHLPAAAA APPSEEEMAA  60
WLYPIVGGHQ VAAGGWLSPE AGDDRRAAPP APEKKQMDNM PAVASPTTTM NKDEASDDSG  120
ERKKKKKKKA SSAAGKASRH RHAAGAHNLT EKRRRFKITE RFRTLQRLVP GCDNKSNQAS  180
TLDQTIQYMK SLQHQLEATS AVGPPAAAVL YPAAVHPQSY MHPPAPPPPV AGAAAPVTMA  240
PMPAGMVLAA APPGAAPPPG PPATMMPFGA MLPYPPYPAV LLPPPPATLY GRPPAAAPSV  300
AARRHGSTSG GARISKSSSS SLRKEL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120126ERKKKKK
2122128KKKKKKK
3150155EKRRRF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619315.11e-144transcription factor APG
TrEMBLA0A0E0BUV10.0A0A0E0BUV1_9ORYZ; Uncharacterized protein
STRINGOGLUM12G19510.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62832452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.14e-12phytochrome interacting factor 3-like 5