PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM12G05080.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C2H2 | ||||||||
Protein Properties | Length: 468aa MW: 50898 Da PI: 5.5831 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 21.8 | 4.9e-07 | 233 | 254 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H OGLUM12G05080.1 233 FCGICGKGFKRDANLRMHMRGH 254 6*******************98 PP | |||||||
2 | zf-C2H2 | 10.7 | 0.0017 | 322 | 345 | 1 | 23 |
EEETTTT.EEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCg.ksFsrksnLkrHirtH 23 ++C+ Cg k+Fs +Lk+H + + OGLUM12G05080.1 322 HVCGRCGaKRFSVMADLKTHEKHC 345 79******************9876 PP | |||||||
3 | zf-C2H2 | 10.9 | 0.0014 | 354 | 368 | 6 | 20 |
TTEEESSHHHHHHHH CS zf-C2H2 6 CgksFsrksnLkrHi 20 Cg+sFsrk+ L H OGLUM12G05080.1 354 CGTSFSRKDKLFAHV 368 **************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.03E-5 | 231 | 254 | No hit | No description |
PROSITE profile | PS50157 | 11.759 | 232 | 259 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0091 | 232 | 254 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.2E-5 | 233 | 258 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 234 | 254 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 89 | 284 | 317 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 1.03E-5 | 317 | 343 | No hit | No description |
SMART | SM00355 | 47 | 322 | 344 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010044 | Biological Process | response to aluminum ion | ||||
GO:0010447 | Biological Process | response to acidic pH | ||||
GO:0043620 | Biological Process | regulation of DNA-templated transcription in response to stress | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 468 aa Download sequence Send to blast |
MDRDQMMNTM RDQAANLTSM NPLFYPFMAD DALLGMAPPP PQQLLPSVSI QHMDWSPDTM 60 LDNLTFIEEK IRQVKDVIRS MAGRRASSSS AATPEQQLVN ADLTCLIVQL ISTAGSLLPS 120 LKNSSFLSRT TPPPAAPAGA AQAVSLAAGE SSSSARNNET NREDEEEQMG SPDYDELFKG 180 WTNGGAMDEC VGAAGDEQDA RENPAAAAAA AEEEKYEVLQ LEEDEILAPH THFCGICGKG 240 FKRDANLRMH MRGHGDEYKS AAALAKPPPP PEGEEQPPQP ERRYSCPHAG CKRNRMHASF 300 QPLKTILCVK NHYKRSHCEK RHVCGRCGAK RFSVMADLKT HEKHCGRDRW LCSCGTSFSR 360 KDKLFAHVAL FQGHAPALPP PPPPPTSGRR RHKQEEPEFT WGGGGGDEFL DVKGIAGVGS 420 GSGGGDEFFS AGSFGAMDFG FEQLDASLAM LLPSEQFAGD HQEENGDK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that regulates the expression of genes involved in aluminum (Al) tolerance. Binds to the promoter of STAR1 and regulates transcript expression of STAR1 STAR2 and ART1 required for Al tolerance. {ECO:0000269|PubMed:19880795}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00196 | ampDAP | Transfer from AT1G34370 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB379846 | 0.0 | AB379846.1 Oryza sativa Japonica Group STAR3 mRNA for C2H2-type domain containing zinc finger protein, complete cds. | |||
GenBank | AL731761 | 0.0 | AL731761.3 Oryza sativa chromosome 12, . BAC OJ1119_B11 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. | |||
GenBank | AL954825 | 0.0 | AL954825.3 Oryza sativa chromosome 12, . BAC OJ2007_H06 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. | |||
GenBank | AP014968 | 0.0 | AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015620753.1 | 0.0 | zinc finger protein STAR3 | ||||
Swissprot | Q2QX40 | 0.0 | ART1_ORYSJ; Zinc finger protein STAR3 | ||||
TrEMBL | A0A0E0BPL0 | 0.0 | A0A0E0BPL0_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM12G05080.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1512 | 38 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34370.3 | 2e-79 | C2H2 family protein |