PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM11G02250.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GRAS | ||||||||
Protein Properties | Length: 76aa MW: 8782.79 Da PI: 8.2452 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 24.9 | 2.3e-08 | 2 | 43 | 336 | 374 |
GRAS 336 qaklllrkvksdg.yrveee..sgslvlgWkdrpLvsvSaWr 374 +a+ ll+ +++ g y+v ++ + ++++W++rpL++v+aWr OGLUM11G02250.1 2 EARKLLQSCGWAGpYEVRHDagGHGFFFCWHKRPLYAVTAWR 43 6999******8888****884345678**************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03514 | 7.9E-6 | 2 | 43 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 76 aa Download sequence Send to blast |
MEARKLLQSC GWAGPYEVRH DAGGHGFFFC WHKRPLYAVT AWRPAASRRG HTRSTKEISA 60 DNEQQMNDTY IQETID |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC123527 | 4e-82 | AC123527.3 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0068G15, complete sequence. | |||
GenBank | AC151480 | 4e-82 | AC151480.1 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNAa0068G15, complete sequence. | |||
GenBank | AP014967 | 4e-82 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. | |||
GenBank | FQ377947 | 4e-82 | FQ377947.1 Oryza glaberrima chromosome 12. | |||
GenBank | FQ378034 | 4e-82 | FQ378034.1 Oryza glaberrima chromosome 11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015616659.1 | 1e-33 | scarecrow-like protein 3 | ||||
TrEMBL | A0A0E0BF47 | 1e-51 | A0A0E0BF47_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM11G02250.1 | 2e-52 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP25542 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 2e-09 | scarecrow-like 3 |