PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM08G23650.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 262aa    MW: 27611.4 Da    PI: 7.9909
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM08G23650.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.41.3e-1394138554
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      h e+Er+RR+++N +f eLr  +P+       +++Ka+ L  Av+YI +L
  OGLUM08G23650.1  94 HVEAERQRREKLNRRFCELRAAVPTV-----SRMDKASLLADAVDYIAEL 138
                      889**********************6.....4***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.85389138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.46E-1794154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.07E-1294143No hitNo description
PfamPF000104.6E-1194138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-1794150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-1295144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MDELVLSPSS FSATACFPTL DFEFCEVPDQ WLLGLGHDEL DKDAAASALA AAAASQSASN  60
DDVPRNPPAT TTTKRRGRKP GPRSGGGGAP PIGHVEAERQ RREKLNRRFC ELRAAVPTVS  120
RMDKASLLAD AVDYIAELRR RVERLEAEAR RAPLAPSAAA AAAWAAGLGA GAIGRDDLVV  180
RMVGRDAAIL RLTTAAAAAR HAPARMMCAV RALNLAVQHA SVARVGGATV QDVMVDDVLA  240
ALQDEARLRA ALLHTLQLAD TT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-2087148263Transcription factor MYC2
5gnj_B3e-2087148263Transcription factor MYC2
5gnj_E3e-2087148263Transcription factor MYC2
5gnj_F3e-2087148263Transcription factor MYC2
5gnj_G3e-2087148263Transcription factor MYC2
5gnj_I3e-2087148263Transcription factor MYC2
5gnj_M3e-2087148263Transcription factor MYC2
5gnj_N3e-2087148263Transcription factor MYC2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039140.0AP003914.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1521_G02.
GenBankAP0046320.0AP004632.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0623F08.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649359.11e-141transcription factor bHLH14
TrEMBLA0A0E0AYF00.0A0A0E0AYF0_9ORYZ; Uncharacterized protein
STRINGOGLUM08G23650.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46760.14e-16bHLH family protein