PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OGLUM08G19580.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 660aa MW: 72213.2 Da PI: 7.0035 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.9 | 0.00068 | 363 | 385 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C+k++ +s + Hi +H OGLUM08G19580.2 363 FECPVCNKTYEEQSRYFGHIGSH 385 89***************999777 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50982 | 9.693 | 188 | 261 | IPR001739 | Methyl-CpG DNA binding |
SuperFamily | SSF54171 | 1.73E-6 | 192 | 243 | IPR016177 | DNA-binding domain |
Pfam | PF01429 | 6.6E-5 | 198 | 241 | IPR001739 | Methyl-CpG DNA binding |
SMART | SM00355 | 0.41 | 314 | 337 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 316 | 337 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.088 | 363 | 385 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.85 | 363 | 390 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 365 | 385 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 660 aa Download sequence Send to blast |
METEVFPVVD LRVLTQSDLD ELAAASAHAV DPRSSCPDRA VFNESAGSRK QTFSRVRFVP 60 AAAAAAAAAA ASASAAAAAK LPRGNDKEDS FIAYHLRRLF APDDPSLTEN PSFPQTQTLA 120 RSPSPDPDQL TTNSRGVSVD LVSLSRLADP YDAELGKRTA RMTTEEELMG FISSLEGQWV 180 NQRMRRKLVD ASFFGDHLPS GWRLQLGIER KDRKAWVNCF SYVSPKGQSF ATCQEVSAYL 240 MSLLGYPEFK TDNIEYGSTQ QHGLCADDGV NVLGVQHQIG TSMDSQSNFP VASATFYSHS 300 RDQDETVADD INSYECQQCN LTFHGQSAYA HHLITFHKVS SKRRKSNKVS KFGEPVIGKD 360 GKFECPVCNK TYEEQSRYFG HIGSHAKYQG LTPEAFLQTF SGKVGLSSSL QVLVGSPQLN 420 EKTTACEARS QHHDCSTKHG GNSTRGIDLF NSNHPANFNG HNQSWCRSDE IPPTTEAQST 480 WTYRNNEMNC ADRTVPRTVP QPNDHEDCRV SGFAEATNFN DQAGRHQGFR PFSFGTTNHC 540 QGRIIDHAVA ASKHAEVNNS MKSRDVNLYS RLNTISFPIA TANNETSTAL NDEIAAGPAR 600 MEALFCLCRR GVVSGQETPL VRHSGSGGLA PSGRPPANKA AALLREGQPL WCLSGMEAKL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK068243 | 0.0 | AK068243.1 Oryza sativa Japonica Group cDNA clone:J013149G12, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015650335.1 | 0.0 | uncharacterized protein LOC4345879 isoform X1 | ||||
Refseq | XP_015650336.1 | 0.0 | uncharacterized protein LOC4345879 isoform X1 | ||||
Refseq | XP_015650337.1 | 0.0 | uncharacterized protein LOC4345879 isoform X1 | ||||
TrEMBL | A0A0E0AWU2 | 0.0 | A0A0E0AWU2_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM08G19580.2 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2687 | 14 | 19 |