PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM08G10500.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 449aa    MW: 47426.7 Da    PI: 9.5008
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM08G10500.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix66.65.3e-21105225186
         trihelix   1 rWtkqevlaLiearremeerlrrgk..................................lkkplWeevskkmrergferspkqCkekwenlnkr 60 
                      +Wt+ +v++Li+++ +++++    +                                  +kk++W++vs++m+e g  +sp+qC++k+++lnkr
  OGLUM08G10500.1 105 KWTDGMVRLLINVVYSVGDDGDGVAaggaaggkasagaaghgkaggsgshgahgqaaaqQKKGKWKSVSRAMMESGHMVSPQQCEDKFNDLNKR 198
                      69999999999998855555443222233444455555555556666666666666666*********************************** PP

         trihelix  61 ykkikegekkr.tsessstcpyfdqle 86 
                      yk++ +  +++ +++++++++++d ++
  OGLUM08G10500.1 199 YKRVVDLLGRGkACKVVENHALLDAMD 225
                      *********9967************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.0E-17103251No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MGPRGVVGSA AMLGLEMHLA HPQMHATAYQ QPDPHGGGGG GFQQQVAAVR QQQQQSYSPY  60
SAGASSRVIK APGHDDGMGN GAGKGGVVQQ QQQPGSAGCP WTRMKWTDGM VRLLINVVYS  120
VGDDGDGVAA GGAAGGKASA GAAGHGKAGG SGSHGAHGQA AAQQKKGKWK SVSRAMMESG  180
HMVSPQQCED KFNDLNKRYK RVVDLLGRGK ACKVVENHAL LDAMDELTHK AKDEARKLLS  240
SKHLFFREMC AYHNSGAAAA AAAHGPHGAG AAGRRRGDDV SSAGAGDDDD EDGVKRARGA  300
ASAAGGGDDE GPSAVQQLQS ELAAAVAGGG DPQQVRQWVR RRTVEVEEQQ VAHEVRAYHL  360
ERQRLKWERF RANKERDMER ARLRNDRLRI DGRRMLLLLR QKDLDFDIAE ANSSSVDHLT  420
SSAPPPLAAL QQQQQPLGSS PSTAAGHPN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0034140.0AP003414.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1153F04.
GenBankAP0039210.0AP003921.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0028G04.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020171378.11e-141uncharacterized protein LOC109756958
TrEMBLA0A0E0ATK30.0A0A0E0ATK3_9ORYZ; Uncharacterized protein
STRINGOGLUM08G10500.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119443138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.14e-44sequence-specific DNA binding transcription factors