PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM07G26710.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Dof

Protein Properties

Length: 478aa MW: 50967.4 Da PI: 5.4695

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM07G26710.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.5	6.9e-39	106	165	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rn+PvG+grrk+k+s OGLUM07G26710.1 106 PDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKSCQRYWTAGGSMRNLPVGAGRRKSKSS 165 7899*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-31	103	163	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.1E-31	108	164	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.528	110	164	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	112	148	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 478 aa Download sequence Send to blast
MDDLAAASPP HPPPPPPPPE SHVPPPPQTP EKDSCEDTGD MRISEEKPCT DQELDADQTN 60 SSSFNSSSEC ENQTPSNDEM TGSESKSEAA QTEGGGSSED KVLKKPDKIL PCPRCNSMDT 120 KFCYYNNYNI NQPRHFCKSC QRYWTAGGSM RNLPVGAGRR KSKSSTANYR SILITGSNLA 180 APAGDAPLYQ LSIKGDQTAT AVKFAPDSPL CNSMASVLKI GEQSKNAKPT STAQPRNGET 240 QTCPASGTTS DSPRNEPVNG AVSGHQNGIV GHSGVPPMHP IPCFPGPPFV YPWSPAWNGI 300 PAMAPPVCTA PAEPANSSDN GSTASVQWSM PPVMPVPGYF PVIPSSVWPF ISPWPNGAWS 360 SPWIQPNCSV SASSPTSTST CSDNGSPVLG KHSRDSKPQG DDKAEKNLWI PKTLRIDDPD 420 EAAKSSIWTT LGIEPGDRSM FRSFQSKPES REQISGAARV LQANPAALSR SQSFQETT

Sequence ? help Back to Top

Protein Sequence Length: 478 aa Download sequence Send to blast

MDDLAAASPP HPPPPPPPPE SHVPPPPQTP EKDSCEDTGD MRISEEKPCT DQELDADQTN  60
SSSFNSSSEC ENQTPSNDEM TGSESKSEAA QTEGGGSSED KVLKKPDKIL PCPRCNSMDT  120
KFCYYNNYNI NQPRHFCKSC QRYWTAGGSM RNLPVGAGRR KSKSSTANYR SILITGSNLA  180
APAGDAPLYQ LSIKGDQTAT AVKFAPDSPL CNSMASVLKI GEQSKNAKPT STAQPRNGET  240
QTCPASGTTS DSPRNEPVNG AVSGHQNGIV GHSGVPPMHP IPCFPGPPFV YPWSPAWNGI  300
PAMAPPVCTA PAEPANSSDN GSTASVQWSM PPVMPVPGYF PVIPSSVWPF ISPWPNGAWS  360
SPWIQPNCSV SASSPTSTST CSDNGSPVLG KHSRDSKPQG DDKAEKNLWI PKTLRIDDPD  420
EAAKSSIWTT LGIEPGDRSM FRSFQSKPES REQISGAARV LQANPAALSR SQSFQETT

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00046	PBM	Transfer from AT5G39660	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK104095	0.0	AK104095.1 Oryza sativa Japonica Group cDNA clone:001-032-E07, full insert sequence.
GenBank	AY224430	0.0	AY224430.1 Oryza sativa (japonica cultivar-group) isolate 20587 AOBP-like protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015647890.1	0.0	cyclic dof factor 2
TrEMBL	A0A0E0APF2	0.0	A0A0E0APF2_9ORYZ; Uncharacterized protein
STRING	OGLUM07G26710.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1434	38	116

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	3e-81	cycling DOF factor 2