PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM07G15440.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Dof

Protein Properties

Length: 360aa MW: 34317 Da PI: 8.0653

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM07G15440.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.8	5.7e-39	47	106	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +al+cprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+s+ OGLUM07G15440.1 47 AEALRCPRCDSANTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRSR 106 57899****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-31	43	103	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.7E-33	49	104	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.385	50	104	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	52	88	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048364	Biological Process	root development
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MAGAGGAATA AAGGGGGGGV AAGRSGGGGG GGGAAAAAGA GAPDPRAEAL RCPRCDSANT 60 KFCYYNNYSL SQPRHFCKAC KRYWTRGGTL RNVPVGGGCR KNKRSRSGGA APGGGVGRGG 120 PGGGAAAAVS SAGGGAAGTS PASSLALPQP GSLPSLSSAL GLTGGTSLAS LLLGSGGSGG 180 DHLGLFQAMQ SVVSDAAAFE MHQQHQSQVD HLLGLGYGAA GAQIQAAKPW LHDGGATGGL 240 LDGFYAPLLS GSIVPGLEEL QVKAEATTGD HQQKSSAAAA GEQSWDLPTP SSSNVEASII 300 ASDALMAAAA ASMNPAVSAA AASTAPSAQS LLYWGNGGIG AAAAAWPDLA NCGSSIATLF

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MAGAGGAATA AAGGGGGGGV AAGRSGGGGG GGGAAAAAGA GAPDPRAEAL RCPRCDSANT  60
KFCYYNNYSL SQPRHFCKAC KRYWTRGGTL RNVPVGGGCR KNKRSRSGGA APGGGVGRGG  120
PGGGAAAAVS SAGGGAAGTS PASSLALPQP GSLPSLSSAL GLTGGTSLAS LLLGSGGSGG  180
DHLGLFQAMQ SVVSDAAAFE MHQQHQSQVD HLLGLGYGAA GAQIQAAKPW LHDGGATGGL  240
LDGFYAPLLS GSIVPGLEEL QVKAEATTGD HQQKSSAAAA GEQSWDLPTP SSSNVEASII  300
ASDALMAAAA ASMNPAVSAA AASTAPSAQS LLYWGNGGIG AAAAAWPDLA NCGSSIATLF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003815	0.0	AP003815.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1163_G04.
GenBank	AP014963	0.0	AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015647864.1	1e-147	dof zinc finger protein DOF5.4
TrEMBL	A0A0E0AKD8	0.0	A0A0E0AKD8_9ORYZ; Uncharacterized protein
STRING	OGLUM07G15440.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8895	30	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	7e-34	TARGET OF MONOPTEROS 6