PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G25990.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 691aa    MW: 75068.3 Da    PI: 7.1516
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G25990.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH192.4e-06143163526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +C+ +   G+C+ G++C++ H+
  OGLUM06G25990.1 143 ECNMYKM-GFCPNGPNCRYKHV 163
                      6666666.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.95784111IPR000571Zinc finger, CCCH-type
SMARTSM003563.6E-584110IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.6E-585111IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-685109IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.596112137IPR000571Zinc finger, CCCH-type
SMARTSM003560.01112138IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.065138165IPR000571Zinc finger, CCCH-type
SMARTSM003560.0031140164IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.100.001144162IPR000571Zinc finger, CCCH-type
PROSITE profilePS5088257.421286421IPR007275YTH domain
PfamPF041465.1E-44286420IPR007275YTH domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:1900363Biological Processregulation of mRNA polyadenylation
GO:2000031Biological Processregulation of salicylic acid mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003723Molecular FunctionRNA binding
GO:0004521Molecular Functionendoribonuclease activity
GO:0005516Molecular Functioncalmodulin binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 691 aa     Download sequence    Send to blast
MSPKSQLPTG AKNPKNSLSP TMDDGDLSFD FEGGLDQAPA GGGGGPAPHS SDPGGVGGGG  60
VGGGGGGGGP GDGGGHGRGR GRGSYRQTVC RHWLRGLCMK GEACGFLHQF DKARMPVCRF  120
FRDFGECREP DCAYKHSYDD VKECNMYKMG FCPNGPNCRY KHVKLPGPPP PVEEVLQKIL  180
QIRSFNKFNQ HRHNNYNQQG ERPQHPQGSG LPNQNSIDNT TTTTAQPAVG QQAQTTNQQP  240
PQQQQQQQQQ QQQQQKPNTN DQVQSVPNGS SNQATRIATP LPQGPSRYFI VKSCNRENLE  300
ISVQQGIWAT QRSNEAKLNE AFESIENVIL IFSINRTRNF QGCAKMTSRI GGYIGGGNWK  360
SAHGTAHYGR NFSIQWLKLC ELSFQKTHHL RNPYNDNLPV KISRDCQELE PFIGEQLASL  420
LYLEPDSELT AILIAAEAKK EEEKAKGVSA DEAADNQDIV LFDDNEEEEE EESEEEEEGN  480
GQESQGRGRG RGMMWPTQMP MLRGVGPMMG GRGFPPNMIG DGFGFGGGFG MPDPFGVPRG  540
FPPFGPRFPG DFARGGPMPG MVFPGRPPQP GGMFPMGLEM MMGPGRGPLM GGLGMGGPGR  600
PNRPVGMAPF MPPPPPPNNR GTKREQRRPG GERGDRYETT SDQGSRGHDA TGNSGAEGAR  660
SQSGDRYGRS ALRDDDSESD EEAAPRRSRK R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zuu_A1e-103271449218030-kDa cleavage and polyadenylation specificity factor 30
5zuu_B1e-103271449218030-kDa cleavage and polyadenylation specificity factor 30
5zuu_C1e-103271449218030-kDa cleavage and polyadenylation specificity factor 30
5zuu_D1e-103271449218030-kDa cleavage and polyadenylation specificity factor 30
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0037280.0AP003728.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0710B08.
GenBankAP0049890.0AP004989.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:B1153E06.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644405.10.0zinc finger CCCH domain-containing protein 45
SwissprotQ0DA500.0C3H45_ORYSJ; Zinc finger CCCH domain-containing protein 45
TrEMBLA0A0E0AD960.0A0A0E0AD96_9ORYZ; Uncharacterized protein
STRINGOGLUM06G25990.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59892428