PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM06G19630.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 513aa MW: 56268.6 Da PI: 9.5824

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM06G19630.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	99.9	3.5e-31	54	228	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.......lelee.vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........ 77 lp+G++F+Ptd+el+ e+L++kv+ ++++ +i+ +i++++P++Lp v+++ + +fF++ +k+y+tg+rk+r+ OGLUM06G19630.1 54 LPAGVKFDPTDQELI-EHLEAKVQPGGeaaahplIDEFIpTIEGEdGICYTHPEKLP-GVSKDGLSRHFFHRPSKAYTTGTRKRRKiqppaaaa 145 799**********.99*988856665543333333766646******.556667799**************88*** PP NAM 78 ...............................tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 ++ +W++tgk+++v+ +g++ g+kk+Lv+y g+++k+ekt+Wvmh+y+l OGLUM06G19630.1 146 ssgggggnassssaaaaavarhghqqqqqqqRSETRWHKTGKTRAVVG-GGRQRGCKKILVLYtnFGKHRKPEKTNWVMHQYHL 228 **********************9998755789*******9.99********5547999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.53E-35	48	138	IPR003441	NAC domain
PROSITE profile	PS51005	26.762	54	247	IPR003441	NAC domain
Pfam	PF02365	7.0E-15	55	228	IPR003441	NAC domain
SuperFamily	SSF101941	3.53E-35	182	247	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 513 aa Download sequence Send to blast
MDGVVTEDQA GGGGGGHRRL IGSRIEEHRK YMSEESCCPR CGHKIDRKLD WVGLPAGVKF 60 DPTDQELIEH LEAKVQPGGE AAAHPLIDEF IPTIEGEDGI CYTHPEKLPG VSKDGLSRHF 120 FHRPSKAYTT GTRKRRKIQP PAAAASSGGG GGNASSSSAA AAAVARHGHQ QQQQQQRSET 180 RWHKTGKTRA VVGGGRQRGC KKILVLYTNF GKHRKPEKTN WVMHQYHLGE AEEERDGELV 240 VSKIFYQTQP RQCAAADAAA TASAYRRTTS GRDRAAAAAA AAAAAAPMAS ANVSVAAFHG 300 GAAGIDEFSF AQFRSSFEEA GMGASSSDHQ SAMVDQRRQQ QQHDDDEHDH RRGGGGHHYV 360 GQQQSVAATF HVVSSPADPI ARLMSPPPAH QGTVMLRQPE PPYIYHHQED ERPHQPRKFD 420 GRSTSGSGLE EVIMGCTSRR SKGGETSGGK DGTEWQYPSF WPSDSQDHHG WKFHLSAQIY 480 MCKETKMILK QSKRERQKKK KERKNKGDIT RKI

Sequence ? help Back to Top

Protein Sequence Length: 513 aa Download sequence Send to blast

MDGVVTEDQA GGGGGGHRRL IGSRIEEHRK YMSEESCCPR CGHKIDRKLD WVGLPAGVKF  60
DPTDQELIEH LEAKVQPGGE AAAHPLIDEF IPTIEGEDGI CYTHPEKLPG VSKDGLSRHF  120
FHRPSKAYTT GTRKRRKIQP PAAAASSGGG GGNASSSSAA AAAVARHGHQ QQQQQQRSET  180
RWHKTGKTRA VVGGGRQRGC KKILVLYTNF GKHRKPEKTN WVMHQYHLGE AEEERDGELV  240
VSKIFYQTQP RQCAAADAAA TASAYRRTTS GRDRAAAAAA AAAAAAPMAS ANVSVAAFHG  300
GAAGIDEFSF AQFRSSFEEA GMGASSSDHQ SAMVDQRRQQ QQHDDDEHDH RRGGGGHHYV  360
GQQQSVAATF HVVSSPADPI ARLMSPPPAH QGTVMLRQPE PPYIYHHQED ERPHQPRKFD  420
GRSTSGSGLE EVIMGCTSRR SKGGETSGGK DGTEWQYPSF WPSDSQDHHG WKFHLSAQIY  480
MCKETKMILK QSKRERQKKK KERKNKGDIT RKI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	494	500	ERQKKKK
2	495	501	RQKKKKE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012614	0.0	CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015641895.1	0.0	NAC domain-containing protein 75 isoform X2
Swissprot	Q9M0F8	1e-118	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	A0A0E0AAX5	0.0	A0A0E0AAX5_9ORYZ; Uncharacterized protein
STRING	OGLUM06G19630.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1453	38	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	1e-100	NAC domain containing protein 75

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]