PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM06G07380.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 272aa MW: 28476.6 Da PI: 4.7192 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.6 | 2.8e-17 | 69 | 117 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ykGVr ++ +g+Wv+eIr ps+ ++r++lg++ tae Aa+a++aa ++l+g OGLUM06G07380.1 69 YKGVRMRS-WGSWVSEIRAPSQ---KTRIWLGSYSTAEAAARAYDAALLCLKG 117 9****998.**********964...6************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.11E-17 | 68 | 128 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 9.1E-28 | 68 | 126 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.733 | 68 | 126 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.0E-32 | 68 | 132 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.0E-9 | 69 | 80 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.03E-15 | 69 | 127 | No hit | No description |
Pfam | PF00847 | 2.0E-10 | 69 | 117 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.0E-9 | 91 | 107 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MAGSHIEVSN TPHTHTEQQQ QQHQTARHNE RSLAFQAIKR FDMVKTAASN GAAAARRVGG 60 GADGKRAAYK GVRMRSWGSW VSEIRAPSQK TRIWLGSYST AEAAARAYDA ALLCLKGSAA 120 ADLNFPVRLP FDLPAAAMSP KSIQRVAAAA AANANANASS SCSAAVFAGV DDDSGGASAS 180 EASTPACSSS DGAASPSPVS SPETVISDVD VDYSLLADIE AFFQSPKCME YAMMDPCSAF 240 FAPPPPPAMA MEEECGWEEE GDIALWSFSS LD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-12 | 59 | 126 | 5 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012614 | 0.0 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025881784.1 | 1e-107 | ethylene-responsive transcription factor ERF014 | ||||
TrEMBL | A0A0E0A6L8 | 0.0 | A0A0E0A6L8_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM06G07380.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3197 | 34 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G44830.1 | 3e-26 | ERF family protein |