PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM06G05610.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 422aa MW: 41665 Da PI: 6.32

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM06G05610.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.2	5.3e-12	217	262	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq OGLUM06G05610.1 217 HSIAERLRRERIAERMKSLQELVPNA-----NKTDKASMLDEIIDYVKFLQ 262 99*********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	8.71E-13	210	266	No hit	No description
SuperFamily	SSF47459	8.37E-17	210	272	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.282	212	261	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.0E-16	214	271	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.0E-9	217	262	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.9E-13	218	267	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 422 aa Download sequence Send to blast
MQPSSRDTVA GGGGEGTQDD FFDQMLSTLP SAWADLGGGG GGAAGKSPWE VDPAAAAAAA 60 SQVFDESALL ASRLRHHQIG GAGGGGGEKP VMLQLSELHR QAGGGEEDGS GAFSPLPLFT 120 DRTNVPPREE MEGGFKSPNA AAGGEHALFN GFGVHGGGGG GAGQPPFGQG GSMSGQSFGG 180 PAASGGTAPV TSSGGGGTAP PRQQRVRARR GQATDPHSIA ERLRRERIAE RMKSLQELVP 240 NANKTDKASM LDEIIDYVKF LQLQVKVLSM SRLGGAAGMA PLVASMSSEG NSNGSSNGGG 300 GKASKGGTGG EGGGGGGGGG GGGTGGGMRV TEQQVAKMME EDMGTAMQYL QGKGLCLMPI 360 SLASAISSAT SSASLLSRPS IRHAGAPPQT MLDAAGPTSP AAMSNGDDPR HAKADGGAGG 420 TQ

Sequence ? help Back to Top

Protein Sequence Length: 422 aa Download sequence Send to blast

MQPSSRDTVA GGGGEGTQDD FFDQMLSTLP SAWADLGGGG GGAAGKSPWE VDPAAAAAAA  60
SQVFDESALL ASRLRHHQIG GAGGGGGEKP VMLQLSELHR QAGGGEEDGS GAFSPLPLFT  120
DRTNVPPREE MEGGFKSPNA AAGGEHALFN GFGVHGGGGG GAGQPPFGQG GSMSGQSFGG  180
PAASGGTAPV TSSGGGGTAP PRQQRVRARR GQATDPHSIA ERLRRERIAE RMKSLQELVP  240
NANKTDKASM LDEIIDYVKF LQLQVKVLSM SRLGGAAGMA PLVASMSSEG NSNGSSNGGG  300
GKASKGGTGG EGGGGGGGGG GGGTGGGMRV TEQQVAKMME EDMGTAMQYL QGKGLCLMPI  360
SLASAISSAT SSASLLSRPS IRHAGAPPQT MLDAAGPTSP AAMSNGDDPR HAKADGGAGG  420
TQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	221	226	RLRRER
2	307	323	TGGEGGGGGGGGGGGGT

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP005919	0.0	AP005919.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0554A06.
GenBank	AP014962	0.0	AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBank	CP012614	0.0	CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015642979.1	0.0	transcription factor bHLH66
Swissprot	Q9ZUG9	9e-74	BH066_ARATH; Transcription factor bHLH66
TrEMBL	A0A0E0A5Y0	0.0	A0A0E0A5Y0_9ORYZ; Uncharacterized protein
STRING	OGLUM06G05610.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1419	37	118

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58010.1	4e-38	LJRHL1-like 3

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]