PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM05G24020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 496aa MW: 54135 Da PI: 6.6736 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 86 | 7e-27 | 20 | 157 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.....kvkaeekewyfFskrdkkyatgkrknratk..sgyWk.atg 87 +GfrF+P++ e v +yL ++++g++ + +i ++y++eP++L + ++e+ wyf s+rd+ky++gkr++r+t+ +g+Wk +tg OGLUM05G24020.1 20 MGFRFKPREAEAVEYYLLPRLQGRPPVPNPAIVVENVYEFEPERLInEkcnggVGGEGEEGWYFLSPRDRKYRNGKRPSRSTEdkAGRWKaSTG 113 7************************7666779999**********733455532233777********************887679****5566 PP NAM 88 k...dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 k + ++++ g ++ + ++Lv++kg ++ +kt+W+m e+++ OGLUM05G24020.1 114 KtegKDPITECYGGVKFCVTSLVYFKGPVKTEKKTKWLMREFTI 157 6444567888799999***********99999**********86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 32.974 | 18 | 194 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.05E-29 | 19 | 194 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.1E-15 | 20 | 156 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 496 aa Download sequence Send to blast |
MAGLGKGESS GGGGGGGGEM GFRFKPREAE AVEYYLLPRL QGRPPVPNPA IVVENVYEFE 60 PERLINEKCN GGVGGEGEEG WYFLSPRDRK YRNGKRPSRS TEDKAGRWKA STGKTEGKDP 120 ITECYGGVKF CVTSLVYFKG PVKTEKKTKW LMREFTIPHF ENKLDKTAAS ASAAAGSSNK 180 RQLDQYVLCR IYTSPKKGAD DGEQAEVVRG GGGEDIDEWA EACAVFDLGP ETAEGSDNAD 240 AAAAEGDMRS AKQAGKRPVA AAAVAEQPSK RPWLPPSPST PCDGGPSQAM GNRQVPMQGL 300 SLMHNFPPPT TTFCGHAPLQ QGFPVHNNRA QMRWPTMQHN CMPSPAHSFH PRPVQRRPVL 360 VGQAPPQRRP VHHVGGHAPM HMHQAQWMPV HIAQAPMQQL PFDDWVFDPF DDPPPPMQQL 420 PVMMNNYQPQ APMQLPPMMN NDQPAMVHGG ELQAPMQLLP ATTHGGEVQA PMPLNVYEEE 480 QRPSQEDGGQ CTNAEG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 7e-16 | 21 | 194 | 18 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012613 | 0.0 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025881431.1 | 1e-177 | pollen-specific leucine-rich repeat extensin-like protein 1 | ||||
TrEMBL | A0A0E0A1L5 | 0.0 | A0A0E0A1L5_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM05G24020.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14361 | 20 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02450.2 | 9e-19 | NAC domain containing protein 35 |