PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM05G15290.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 521aa    MW: 54475.4 Da    PI: 8.0504
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM05G15290.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS231.63.5e-711185194374
             GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn....sseelaalklfsevsPilkf 93 
                       L +cAea++++  + a+a La +  +as dgd++qR+a  f+eA+a+ + r + ++++al ps++          e+ +a++ f +++P+l +
  OGLUM05G15290.1 118 HLRRCAEALAASRPADADAELASIARMASADGDAVQRVAVAFAEAMARVVIRPWRGVSAALFPSDAGAAGdaltAWEAEFARQSFLNLCPLLHL 211
                      6889*********************************************************66666544346767778888999********** PP

             GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                      + ++ N+ Ile + +++ +Hi+D++  + ++W+ Llq La+R+ +  p lR+T v++    +k+ l + ++ La   ++ gvp++ ++ v++++
  OGLUM05G15290.1 212 AAVAVNEIILETTRNDKFIHIVDLGGIHHAHWVELLQGLATRRaAVRPCLRLTIVHE----HKHFLAQAAQVLAAESDRHGVPLDLHI-VESSV 300
                      ****************************************98867799*********....99************************9.799** PP

             GRAS 187 edleleeLrvkpgEalaVnlvlqlhrll.........................desvsleserdevLklvkslsPkvvvvveqeadhnsesFle 255
                      e+l+l++L v+++ a+++ ++lqlhrl+                           +++++s+ d++L+ +  lsP+ ++++e+ea+h  +sF +
  OGLUM05G15290.1 301 EALKLDALGVRSDHAVVIVSMLQLHRLVgagilsttappspaaaaaasmitspLPPANMSSKVDRLLRGFHLLSPRAIILTENEANHFVPSFTD 394
                      **************************************************9987788888899******************************* PP

             GRAS 256 rflealeyysalfdsleaklpreseerikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplse..kaakqaklllrkvks 346
                      rf++al yy  lf ++e+  ++++ er+  Er ll++ei++v+ac ++  r +rhetl++W  r+++aGF  +p  +  +aa  ++++ ++ ++
  OGLUM05G15290.1 395 RFASALPYYEQLFAAMEEA-GAAAVERKAAERYLLREEIKDVIACDHDGpRWARHETLGRWVVRMGAAGFALAPAITvvTAAGRVRAVAARLPG 487
                      ****************887.7899**********************9988********************988765511445555666666654 PP

             GRAS 347 dg....yrveeesgslvlgWkdrpLvsvSaWr 374
                       g    y v e  g+l+l  +++p++ vSaWr
  OGLUM05G15290.1 488 GGderrYGVTEGGGWLILNREEKPMFCVSAWR 519
                      334566*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098536.78489493IPR005202Transcription factor GRAS
PfamPF035141.2E-68118519IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MATATAPAAV AAADNGGHGS SSASQNASGS GEGQGGSMSL SLQLRPLGST PTAAVAVSVP  60
PMAAAPMMAG PAAAAPAPAP PLATMAVAQN ASLAAVASAL AAHRRNQATH RSSALHGHLR  120
RCAEALAASR PADADAELAS IARMASADGD AVQRVAVAFA EAMARVVIRP WRGVSAALFP  180
SDAGAAGDAL TAWEAEFARQ SFLNLCPLLH LAAVAVNEII LETTRNDKFI HIVDLGGIHH  240
AHWVELLQGL ATRRAAVRPC LRLTIVHEHK HFLAQAAQVL AAESDRHGVP LDLHIVESSV  300
EALKLDALGV RSDHAVVIVS MLQLHRLVGA GILSTTAPPS PAAAAAASMI TSPLPPANMS  360
SKVDRLLRGF HLLSPRAIIL TENEANHFVP SFTDRFASAL PYYEQLFAAM EEAGAAAVER  420
KAAERYLLRE EIKDVIACDH DGPRWARHET LGRWVVRMGA AGFALAPAIT VVTAAGRVRA  480
VAARLPGGGD ERRYGVTEGG GWLILNREEK PMFCVSAWRR Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-271125191375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1057670.0AC105767.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1126_B11, complete sequence.
GenBankAC1362180.0AC136218.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0039A21, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638611.10.0scarecrow-like protein 3
TrEMBLA0A0D9ZYG40.0A0A0D9ZYG4_9ORYZ; Uncharacterized protein
STRINGOGLUM05G15290.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP169421011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.13e-36scarecrow-like 3