PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM04G30770.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 896aa MW: 100372 Da PI: 7.4851

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM04G30770.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	161.5	3.1e-50	526	654	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtd el v+yLk+k+ gk+l++ ++++e+d+yk+ PwdLp k +++++++ewyfF++rd+ky++g+r+nr+t++gyWkatgkd++v OGLUM04G30770.1 526 LPPGFRFHPTDVELTVYYLKRKLLGKHLRC-NAVSELDLYKFAPWDLPeKsSLQSKDREWYFFCPRDRKYSSGSRTNRSTEAGYWKATGKDRPV 618 79**************************.89**********95357788999******************************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129 + ++++vg+k+tLvf+ g+ p+g +tdWvm eyrle OGLUM04G30770.1 619 IY-NSQTVGMKRTLVFHLGKPPRGDRTDWVMYEYRLE 654 .999*****************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03016	4.6E-42	53	340	IPR004263	Exostosin-like
SuperFamily	SSF101941	7.85E-61	514	676	IPR003441	NAC domain
PROSITE profile	PS51005	56.488	526	676	IPR003441	NAC domain
Pfam	PF02365	6.8E-26	527	653	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005768	Cellular Component	endosome
GO:0005802	Cellular Component	trans-Golgi network
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 896 aa Download sequence Send to blast
MRSSHQPLCT RAHQAAALLL VAATFFLTRL LDRSPLSAPP PPCAAPYSPW PHRDLRIYVY 60 AEDEVDGLRA LLRGRNDDVT AATCIKGQWG TQVKIHQLLL SSRFRTFDKD EADLFFVPTY 120 VKCVRMTGKL NDKEINQTYV KVVLSQMPYF RRSGGRDHIF VFPSGAGAHL FRSWATFLNR 180 SIILTPEGDR TDKRGISAFN TWKDIIIPGN VDDSMVKSDR LAVKPIPLTK RKYLANFLGR 240 AQGKVGRLQL VKLAKQYPDK LESPELKLSG PDKLGRIDYF KHLRNAKFCL APRGESSWTL 300 RFYESFFVEC VPVILSDEVE LPFQNVIDYT EVSIKWPASK IGPGLLEYLE SIPDGRVEEM 360 IGRGREIRCL WVYAADTERC SAMSAIMWEL QRKVRRFHQS AETFWLHNRS IVNRDLVEFH 420 EWRTPKGPWG REIWGGGGGR ATATGAACLS PLRAASFQFH LAASPRQHTS VLRPIPLSSP 480 LNLSSLPCRT ASASAPPSPL RGGAAFPSLA DRHHQLLRPS MAKTSLPPGF RFHPTDVELT 540 VYYLKRKLLG KHLRCNAVSE LDLYKFAPWD LPEKSSLQSK DREWYFFCPR DRKYSSGSRT 600 NRSTEAGYWK ATGKDRPVIY NSQTVGMKRT LVFHLGKPPR GDRTDWVMYE YRLEDKELSA 660 SGVKLDACVL CKIFQKSGPG PKIGEQYGAP FNEDDWNEAN GELSSFAFSV PPCALESSNG 720 RLNTAGQQLA VSDNIGSSLD HCSETNDKIA VGGCGTTSPS VPFDTIHTQQ LAEIISCFST 780 DLLNSVSRDG SLPDSTADYD NDNEVSSDDG EAIFNELDEL DSQSDESISN HCNSCGEDLI 840 PPTLEVLKTE QYLELNDLSF SLADDPDPCN LLLTTNLSDQ NHPELETSSN RKALRL

Sequence ? help Back to Top

Protein Sequence Length: 896 aa Download sequence Send to blast

MRSSHQPLCT RAHQAAALLL VAATFFLTRL LDRSPLSAPP PPCAAPYSPW PHRDLRIYVY  60
AEDEVDGLRA LLRGRNDDVT AATCIKGQWG TQVKIHQLLL SSRFRTFDKD EADLFFVPTY  120
VKCVRMTGKL NDKEINQTYV KVVLSQMPYF RRSGGRDHIF VFPSGAGAHL FRSWATFLNR  180
SIILTPEGDR TDKRGISAFN TWKDIIIPGN VDDSMVKSDR LAVKPIPLTK RKYLANFLGR  240
AQGKVGRLQL VKLAKQYPDK LESPELKLSG PDKLGRIDYF KHLRNAKFCL APRGESSWTL  300
RFYESFFVEC VPVILSDEVE LPFQNVIDYT EVSIKWPASK IGPGLLEYLE SIPDGRVEEM  360
IGRGREIRCL WVYAADTERC SAMSAIMWEL QRKVRRFHQS AETFWLHNRS IVNRDLVEFH  420
EWRTPKGPWG REIWGGGGGR ATATGAACLS PLRAASFQFH LAASPRQHTS VLRPIPLSSP  480
LNLSSLPCRT ASASAPPSPL RGGAAFPSLA DRHHQLLRPS MAKTSLPPGF RFHPTDVELT  540
VYYLKRKLLG KHLRCNAVSE LDLYKFAPWD LPEKSSLQSK DREWYFFCPR DRKYSSGSRT  600
NRSTEAGYWK ATGKDRPVIY NSQTVGMKRT LVFHLGKPPR GDRTDWVMYE YRLEDKELSA  660
SGVKLDACVL CKIFQKSGPG PKIGEQYGAP FNEDDWNEAN GELSSFAFSV PPCALESSNG  720
RLNTAGQQLA VSDNIGSSLD HCSETNDKIA VGGCGTTSPS VPFDTIHTQQ LAEIISCFST  780
DLLNSVSRDG SLPDSTADYD NDNEVSSDDG EAIFNELDEL DSQSDESISN HCNSCGEDLI  840
PPTLEVLKTE QYLELNDLSF SLADDPDPCN LLLTTNLSDQ NHPELETSSN RKALRL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-49	518	677	7	169	Stress-induced transcription factor NAC1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK064646	0.0	AK064646.1 Oryza sativa Japonica Group cDNA clone:002-114-D03, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0D9ZSW7	0.0	A0A0D9ZSW7_9ORYZ; Uncharacterized protein
STRING	OGLUM04G30770.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9932	7	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G09330.4	2e-77	NAC domain containing protein 82