PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM04G25200.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

FAR1

Protein Properties

Length: 484aa MW: 53730.9 Da PI: 9.7707

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM04G25200.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	77.8	2.1e-24	197	280	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++Y +YA +vGFsvrk k+ +n +r fvC++eg+r++++ k r+r+etrtgC a++ +k+ ++gk++v++++++HnH+la OGLUM04G25200.1 197 EYYASYAGNVGFSVRKGLWDKTVKN-VARSRVFVCYREGFRSKNEAK-----RPRPETRTGCPARIAIKLVSNGKYRVAEFVEDHNHQLA 280 69**************9999555.599*********98777.....**********************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.1E-22	197	280	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 484 aa Download sequence Send to blast
MATASTSGDP TAAAGEPTPS SSASAQPRQP PSRISHIVRT YLDLSSNPKK RRAAPKSHPK 60 PAAGQGAPDA GDGKDGGGKA AATPSSAAQP TTTRLLRELG VRVSRYTHEE RRDIVLRYMQ 120 KRSGRQGVKR ATAKAPSRQA LAERRRRGAR GQFLGKEGAK TVDKPEEDPE VPPEVIANAG 180 GVPIVGMVFE NEEKAYEYYA SYAGNVGFSV RKGLWDKTVK NVARSRVFVC YREGFRSKNE 240 AKRPRPETRT GCPARIAIKL VSNGKYRVAE FVEDHNHQLA APFDIDMLKS EREFTHDFHH 300 CMFDIEDDQE FDEIWNVIIK KYSLKGEECN EVEKSTGKKK TEVYRHKSAV VTNKRQKTRK 360 DTRHPDEAAT GTRDGELNMT PDNRQSEARN SPNQFLPDQL MQGHYILGQS YGLGTSENLH 420 NNLNQFGQAS SLPTMQQQAF PGNNQLTQGY PSDMHALQFV GANPQMEHQN GDQGQSSIPV 480 WDFL

Sequence ? help Back to Top

Protein Sequence Length: 484 aa Download sequence Send to blast

MATASTSGDP TAAAGEPTPS SSASAQPRQP PSRISHIVRT YLDLSSNPKK RRAAPKSHPK  60
PAAGQGAPDA GDGKDGGGKA AATPSSAAQP TTTRLLRELG VRVSRYTHEE RRDIVLRYMQ  120
KRSGRQGVKR ATAKAPSRQA LAERRRRGAR GQFLGKEGAK TVDKPEEDPE VPPEVIANAG  180
GVPIVGMVFE NEEKAYEYYA SYAGNVGFSV RKGLWDKTVK NVARSRVFVC YREGFRSKNE  240
AKRPRPETRT GCPARIAIKL VSNGKYRVAE FVEDHNHQLA APFDIDMLKS EREFTHDFHH  300
CMFDIEDDQE FDEIWNVIIK KYSLKGEECN EVEKSTGKKK TEVYRHKSAV VTNKRQKTRK  360
DTRHPDEAAT GTRDGELNMT PDNRQSEARN SPNQFLPDQL MQGHYILGQS YGLGTSENLH  420
NNLNQFGQAS SLPTMQQQAF PGNNQLTQGY PSDMHALQFV GANPQMEHQN GDQGQSSIPV  480
WDFL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	241	245	KRPRP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK072027	0.0	AK072027.1 Oryza sativa Japonica Group cDNA clone:J013106I23, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015636013.1	1e-160	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A0D9ZQN6	0.0	A0A0D9ZQN6_9ORYZ; Uncharacterized protein
STRING	OGLUM04G25200.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15013	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-14	FAR1-related sequence 5