PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G15580.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 709aa    MW: 73037.1 Da    PI: 8.1195
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G15580.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.00081189210223
                      EETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                      +Cp Cgk+F +   +  H+r+H
  OGLUM04G15580.1 189 TCPECGKVFMSDKAMYGHLRSH 210
                      8*******************99 PP
2zf-C2H2130.00032463485123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y+C+ C+k+Fs++  L  H   H
  OGLUM04G15580.1 463 YECSECHKTFSTHQALGGHVAAH 485
                      99***********9998887666 PP
3zf-C2H211.10.0012573595123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C  C+++F++   L  H+r+H
  OGLUM04G15580.1 573 HQCLRCPMVFPTGQALGGHMRKH 595
                      79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0066188210IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.887188215IPR007087Zinc finger, C2H2
SuperFamilySSF576674.96E-8189210No hitNo description
PfamPF139122.0E-5190210IPR007087Zinc finger, C2H2
PROSITE patternPS000280190210IPR007087Zinc finger, C2H2
SuperFamilySSF576674.96E-8458485No hitNo description
PfamPF139122.1E-7463487IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.822463490IPR007087Zinc finger, C2H2
SMARTSM003550.02463485IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280465485IPR007087Zinc finger, C2H2
PfamPF139127.6E-6573595IPR007087Zinc finger, C2H2
SMARTSM003550.12573595IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280575595IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 709 aa     Download sequence    Send to blast
MAASGQVRCL LPLRVALSPP LPPWPPATMV MPPLLAAAAA MAASGQVRRL LSLRAALPSP  60
WPLATMAPSS SRHRHHGCRC PGFQYAFVRE KAAGDHLSLG YMQHGDNNNK NKKGDLSNNL  120
DLSSSPLLMD SRGQAYYHRA AAAAAAVAAG DATDGEEPAA AELAPKAVRS KKKLAVEAQG  180
GAAVRDDLTC PECGKVFMSD KAMYGHLRSH PLRKHKGAAR LAAVAAAAAD DASVAAGVKP  240
RPWKVPRTKE EAELGDDRHP GRSPVTGKRG RPASSVSSSG SAPAPAPPAS SRLQLVITEE  300
EEAAMTLLDI ASGCSLDHQP TQPAHVADAA LLAPASDQMP SVDVEQGVLA VAEHRTWEAE  360
KPALVEHVFG IVKEHVATVA ADAEPQSPEA KTPVKLGPVT DQAVPVLGDK NDDGHADMPV  420
SPGGGTTKKP LKRRLQDVET KHPTAPPPPP VRRIPSPASK RKYECSECHK TFSTHQALGG  480
HVAAHKRQKK SCAEQQQEAV AAAAQVARHN FLAHQRPAGV VVAVDATVVA AAGGGIAIGP  540
LGEEGLVGPP PPPPPPPPPP APAPAPAPAP QQHQCLRCPM VFPTGQALGG HMRKHFLEAK  600
EQEQLLAIAI ANANANANAN ANANANAAPE PPPMMANAAP VPPPSMANGA GPVPPPIAGA  660
ALPPPMANGA AAAAPPGGNP APPVGPQPGV NMFDLNELPN EDAGENQQP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1427434KKPLKRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6064410.0AL606441.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0089K21, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880741.10.0zinc finger protein 628-like
TrEMBLA0A0D9ZM010.0A0A0D9ZM01_9ORYZ; Uncharacterized protein
STRINGOGLUM04G15580.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1819399