PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G11850.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family E2F/DP
Protein Properties Length: 409aa    MW: 45273.8 Da    PI: 5.1376
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G11850.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP45.61.1e-141371683871
          E2F_TDP  38 dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                      +v  ++RRiYDi+NVLe+ +liekk kn+irw+g
  OGLUM04G11850.1 137 QV--RKRRIYDITNVLEGTGLIEKKLKNRIRWRG 168
                      34..8***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM013727.9E-8103168IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.8E-13121168IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467858.71E-10135169IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.6E-13137169IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd146601.13E-29178257No hitNo description
SuperFamilySSF1440741.73E-24179258No hitNo description
PfamPF164218.5E-20183257IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MSSGGGRPPA AQHIVRSVRQ RFVPLPPPLA RAPFAAAPGD YHRFAAASRG GEIEEGIVIR  60
RTPLKRKTPC GESEAAESSE RMMTSPGFTE GVGSPLMTPV SGKSSRTTKS MAKFNKAGPQ  120
TPISNAGKFI YGFQQKQVRK RRIYDITNVL EGTGLIEKKL KNRIRWRGSD DSGTNLDSDI  180
SCLKTEVENL YIQEQALDRS ISEIREKMEE LTEDESNHRW LFVTEDDIKG LPCFQNEALI  240
AIKGPRGTTV EVPDPDELLP QKKLSDEHPY YIISQYKKME ELGETATPPR HASVVEPPSI  300
ATEAGHSSKQ TMPLNVQQDI QETPELNASR AFGRMKKITP SDVDTDADYW LLTDDDISIT  360
HMWTTASEMQ WDQIDTNDFL AEEISDTPCA LNQPSAAASE PTGVGFNHG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138160RKRRIYDITNVLEGTGLIEKKLK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0675810.0AK067581.1 Oryza sativa Japonica Group cDNA clone:J013113N12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637107.10.0transcription factor E2FA isoform X2
TrEMBLA0A0D9ZKL50.0A0A0D9ZKL5_9ORYZ; Uncharacterized protein
STRINGOGLUM04G11850.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62537148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36010.14e-68E2F transcription factor 3