PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM04G08470.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 424aa MW: 43651.8 Da PI: 6.5847

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM04G08470.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.8	5.4e-10	251	298	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR+ri +++ L++l+P + +k Ka +L + ++Y++sLq OGLUM04G08470.1 251 SHSLAERVRRERISERMKLLQSLVPGC----NKITGKALMLDEIINYVQSLQ 298 8************************....999***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	6.02E-17	245	316	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.10E-11	245	302	No hit	No description
PROSITE profile	PS50888	15.612	247	297	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.2E-16	247	315	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.2E-7	251	298	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.0E-9	253	303	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence Send to blast
MADEHFFPAG DYFSTSSSGA GTGGAGALLP AAAYGTMTMM PPWAVAAAEQ MMMMAPAAAA 60 AEFDSALSSL VSSPQGGGGG DEMAAIGDLI GRLGSICSHG GASANNSCYS TPLSSPPRAA 120 PPPPFRGYAA AGGRLSRVSS SKSLGGAAAA LDSSEADMNP TTAAAADQPS KPSAAAAAAA 180 ARKRKSSAKP KASSSSLPTA TAATNASPKR SKVAAGAGDD GDADADAAEE KPEPAKDYIH 240 VRARRGQATD SHSLAERVRR ERISERMKLL QSLVPGCNKI TGKALMLDEI INYVQSLQRQ 300 VEFLSMKLAT MNPQLDFDSH YMPSKDMSHM PVPAYPSSDP TTTTAFSYTG SPATADPFTV 360 YNCWELDLHT AMQMGATTTG LSQDGPIATM APSPSPLPHH PPLHGFYGGQ QQQGTTVNHM 420 KAEP

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence Send to blast

MADEHFFPAG DYFSTSSSGA GTGGAGALLP AAAYGTMTMM PPWAVAAAEQ MMMMAPAAAA  60
AEFDSALSSL VSSPQGGGGG DEMAAIGDLI GRLGSICSHG GASANNSCYS TPLSSPPRAA  120
PPPPFRGYAA AGGRLSRVSS SKSLGGAAAA LDSSEADMNP TTAAAADQPS KPSAAAAAAA  180
ARKRKSSAKP KASSSSLPTA TAATNASPKR SKVAAGAGDD GDADADAAEE KPEPAKDYIH  240
VRARRGQATD SHSLAERVRR ERISERMKLL QSLVPGCNKI TGKALMLDEI INYVQSLQRQ  300
VEFLSMKLAT MNPQLDFDSH YMPSKDMSHM PVPAYPSSDP TTTTAFSYTG SPATADPFTV  360
YNCWELDLHT AMQMGATTTG LSQDGPIATM APSPSPLPHH PPLHGFYGGQ QQQGTTVNHM  420
KAEP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FO681475	0.0	FO681475.1 Oryza sativa ssp indica cv (Guangluai4) Awn-1(An-1) full-length cDNA sequence: OS_Guangluai4_cDNA_An-1, PCR product.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015635665.2	0.0	LOW QUALITY PROTEIN: transcription factor bHLH62
Swissprot	Q9SRT2	2e-64	BH062_ARATH; Transcription factor bHLH62
TrEMBL	A0A0D9ZJC9	0.0	A0A0D9ZJC9_9ORYZ; Uncharacterized protein
STRING	OGLUM04G08470.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12547	28	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	3e-46	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]