PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM04G08150.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | B3 | ||||||||
Protein Properties | Length: 146aa MW: 15005.1 Da PI: 8.7752 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 45 | 1.9e-14 | 22 | 121 | 3 | 99 |
EE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 3 kvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldg 86 kvl+ps+ +k + ++ + a++ gg + ++ ++ g+ W+v++ ++ +++ +l++GW eF+ a+gL +g fvv +++g OGLUM04G08150.1 22 KVLMPSSFHKMH---ISDELAAHLlgergdgggGGA--ARRAARVVSPVGKIWDVEVGRDGDGDGgAFLGRGWAEFAAAHGLGVGWFVVVRHEG 110 777777777655...888888555999999974333..44589**************6644444479************************755 PP SSEE..EEEEE-S CS B3 87 rsefelvvkvfrk 99 ++ l+vk+f++ OGLUM04G08150.1 111 --GGVLTVKLFDT 121 ..7778***9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 1.6E-5 | 20 | 122 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.2E-14 | 20 | 124 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.14E-15 | 21 | 125 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 5.0E-11 | 22 | 121 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 8.97E-10 | 22 | 120 | No hit | No description |
PROSITE profile | PS50863 | 9.953 | 66 | 122 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 146 aa Download sequence Send to blast |
MPGDHAGAGA AVGAAAKAMQ LKVLMPSSFH KMHISDELAA HLLGERGDGG GGGAARRAAR 60 VVSPVGKIWD VEVGRDGDGD GGAFLGRGWA EFAAAHGLGV GWFVVVRHEG GGVLTVKLFD 120 TTCCLKDFAA PPAGNRSKDY LHAKFK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL662963 | 1e-133 | AL662963.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0020I02, complete sequence. | |||
GenBank | AP014960 | 1e-133 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002447504.2 | 2e-43 | putative B3 domain-containing protein Os04g0346900 | ||||
Swissprot | Q7XS74 | 3e-47 | Y4474_ORYSJ; Putative B3 domain-containing protein Os04g0347400 | ||||
TrEMBL | A0A0D9ZJ79 | 2e-98 | A0A0D9ZJ79_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM04G08150.1 | 3e-99 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP425 | 35 | 187 |