PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM04G00590.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | E2F/DP | ||||||||
Protein Properties | Length: 478aa MW: 51861.1 Da PI: 4.8298 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 82.7 | 3e-26 | 200 | 265 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 r+++sL+llt+kf++lle +e+g+++ln++a++L +v ++RRiYDi+NVLe+++liek+ kn irwkg OGLUM04G00590.1 200 RYDSSLGLLTKKFINLLEGAEDGTLDLNKAAETL---EV--QKRRIYDITNVLEGVDLIEKTLKNMIRWKG 265 6899******************************...99..****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PRINTS | PR01217 | 2.1E-10 | 8 | 24 | No hit | No description |
PRINTS | PR01217 | 2.1E-10 | 33 | 45 | No hit | No description |
PRINTS | PR01217 | 2.1E-10 | 63 | 84 | No hit | No description |
PRINTS | PR01217 | 2.1E-10 | 84 | 100 | No hit | No description |
Gene3D | G3DSA:1.10.10.10 | 5.8E-28 | 197 | 266 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.63E-16 | 200 | 263 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 7.7E-34 | 200 | 265 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 1.2E-23 | 202 | 265 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
CDD | cd14660 | 1.24E-35 | 276 | 389 | No hit | No description |
SuperFamily | SSF144074 | 3.14E-25 | 277 | 388 | No hit | No description |
Pfam | PF16421 | 2.7E-24 | 281 | 386 | IPR032198 | E2F transcription factor, CC-MB domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000902 | Biological Process | cell morphogenesis | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042023 | Biological Process | DNA endoreduplication | ||||
GO:0051782 | Biological Process | negative regulation of cell division | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 478 aa Download sequence Send to blast |
MDGSAAIPPR PAPTPPAPAP APPQVFLRRS VLPPPPAPHR APPPPGAHVH YFRAASPIPI 60 FRAAASSRPP RPPPPSTTAA AAPPPAAPAV TPARPPPQQP AVAVAPPPAT TTATATEEVA 120 APATGNPMAN AADNEEKNER ETVQSEVAKG ETVQGPDKES TTGTVKGIKR PRKPKGFKKG 180 SLRSNEGDAG PSLFSPNNCR YDSSLGLLTK KFINLLEGAE DGTLDLNKAA ETLEVQKRRI 240 YDITNVLEGV DLIEKTLKNM IRWKGFDMSK PKERERQISA LKEEIESLYD EESRLDDEIM 300 EAQEKLNALR VDEDRRKLLY VSKEDINAIP RFQGSTLIAV NAPRGTYIEV PDPNLDMDIY 360 KDLDNQEKHY QIVFRSAMGP VDCFLISNHQ ETFNADQQMA DNLDAAVTSG SSQAPQQMDY 420 VQASEIGESN GVREHTSEPS KRDDPVPGIV KIVPSDDIAA DYWLSSDADV SMTDTWGT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_A | 9e-20 | 200 | 265 | 7 | 73 | PROTEIN (TRANSCRIPTION FACTOR E2F-4) |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CR854994 | 0.0 | CR854994.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0127D24, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015633977.1 | 0.0 | transcription factor E2FC | ||||
TrEMBL | A0A0D9ZGF4 | 0.0 | A0A0D9ZGF4_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM04G00590.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP625 | 37 | 148 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22220.3 | 1e-82 | E2F transcription factor 1 |