PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G32510.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

GRF

Protein Properties

Length: 588aa MW: 61551.3 Da PI: 7.1349

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G32510.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	76.7	2.4e-24	208	252	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e OGLUM03G32510.1 208 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKHVEG 252 79****************************************986 PP
2	QLQ	57.4	4.4e-20	142	178	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+ +L++Q+l+yKyLaan PvP+ Ll +i++ OGLUM03G32510.1 142 GPFTPSQWIELEHQALIYKYLAANSPVPHSLLIPIRR 178 59*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	2.2E-11	142	178	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	1.0E-14	143	177	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	23.087	143	178	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.455	208	252	IPR014977	WRC domain
Pfam	PF08879	2.1E-20	209	251	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009624	Biological Process	response to nematode
GO:0048364	Biological Process	root development
GO:0048366	Biological Process	leaf development
GO:0061062	Biological Process	regulation of nematode larval development
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 588 aa Download sequence Send to blast
MQRYRHPTLK EGAVVGGGDG PGWRGGGGDG GGGRGCAVEA DTVAELQGAA VAAAAAVSEA 60 VKVAAPFLLG ASCSPGHGGE QMLSFSSSAS SCSSGGGGAA VAAAAAAGGA MPLYYGTPAS 120 CSGLSSVSLS SSMQGAMARV RGPFTPSQWI ELEHQALIYK YLAANSPVPH SLLIPIRRSL 180 TSPYSPAYFG SSTLGWGSFQ LGYSGSADPE PGRCRRTDGK KWRCSRDAVA DQKYCERHMN 240 RGRHRSRKHV EGQPGHAAKA MPAAVAAAAA SATQPSAPAA HSGGAVAGLA INHQHQQMKN 300 YAANTANPCS LQYSRDLANK HNESEQVQDS DSLSMLTSIS TRNTGSLFPF SKQHNPFEVS 360 NSRPDFGLVS PDSLMSSPHS SLENVNLLTS QSLNEQQSSV SLQHFVDWPR TPAQGALAWP 420 DAEDMQAQRS QLSISAPMAS SDLSSASTSP IHEKLMLSPL KLSREYSPIG LGFAANRDEV 480 NQGEANWMPM FRDSLMGGPL GEVLTKNNNM EARNCLSESL NLLNDGWDSS SGFDSSPVGV 540 LQKTTFGSVS SSTGSSPRLE NHSVYDGNSN LRDDLGSVVV NHPSIRLV

Sequence ? help Back to Top

Protein Sequence Length: 588 aa Download sequence Send to blast

MQRYRHPTLK EGAVVGGGDG PGWRGGGGDG GGGRGCAVEA DTVAELQGAA VAAAAAVSEA  60
VKVAAPFLLG ASCSPGHGGE QMLSFSSSAS SCSSGGGGAA VAAAAAAGGA MPLYYGTPAS  120
CSGLSSVSLS SSMQGAMARV RGPFTPSQWI ELEHQALIYK YLAANSPVPH SLLIPIRRSL  180
TSPYSPAYFG SSTLGWGSFQ LGYSGSADPE PGRCRRTDGK KWRCSRDAVA DQKYCERHMN  240
RGRHRSRKHV EGQPGHAAKA MPAAVAAAAA SATQPSAPAA HSGGAVAGLA INHQHQQMKN  300
YAANTANPCS LQYSRDLANK HNESEQVQDS DSLSMLTSIS TRNTGSLFPF SKQHNPFEVS  360
NSRPDFGLVS PDSLMSSPHS SLENVNLLTS QSLNEQQSSV SLQHFVDWPR TPAQGALAWP  420
DAEDMQAQRS QLSISAPMAS SDLSSASTSP IHEKLMLSPL KLSREYSPIG LGFAANRDEV  480
NQGEANWMPM FRDSLMGGPL GEVLTKNNNM EARNCLSESL NLLNDGWDSS SGFDSSPVGV  540
LQKTTFGSVS SSTGSSPRLE NHSVYDGNSN LRDDLGSVVV NHPSIRLV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	23	33	RGGGGDGGGGR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK073578	0.0	AK073578.1 Oryza sativa Japonica Group cDNA clone:J033048N01, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015628630.1	0.0	growth-regulating factor 6
Swissprot	Q6AWY3	0.0	GRF6_ORYSJ; Growth-regulating factor 6
TrEMBL	A0A0D9ZCM1	0.0	A0A0D9ZCM1_9ORYZ; Uncharacterized protein
STRING	OGLUM03G32510.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4290	35	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	3e-53	growth-regulating factor 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Liu H, et al. OsmiR396d-regulated OsGRFs function in floral organogenesis in rice through binding to their targets OsJMJ706 and OsCR4. Plant Physiol., 2014. 165(1): p. 160-74 [PMID:24596329] Gao F, et al. Blocking miR396 increases rice yield by shaping inflorescence architecture. Nat Plants, 2015. 2: p. 15196 [PMID:27250748]