PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G31860.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CO-like
Protein Properties Length: 420aa    MW: 45657.4 Da    PI: 6.5195
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G31860.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.74.3e-071760339
         zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39
                     +r C+ + + +++++C  ++ +lC+ C  + H+        H+v
  OGLUM03G31860.1 17 ARACDGCMRRRARWHCPADDAFLCQACDASVHSAnplarrhHRV 60
                     578*****************************668888886655 PP
2CCT66.29.3e-23336379144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      Rea+++RY+eKr+tR+F KkirYe+RK +Ae+RpR+KGrFvk+a
  OGLUM03G31860.1 336 REARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRA 379
                      9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.4E-71562IPR000315B-box-type zinc finger
PROSITE profilePS501199.7981562IPR000315B-box-type zinc finger
PfamPF006432.7E-51759IPR000315B-box-type zinc finger
CDDcd000212.58E-111862No hitNo description
PROSITE profilePS5101715.993336378IPR010402CCT domain
PfamPF062031.2E-17336378IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MASAAAATGA ALGARTARAC DGCMRRRARW HCPADDAFLC QACDASVHSA NPLARRHHRV  60
RLPSASSSPA SSPRSAAAPR AGSDDPDAPA WLHGLKRRPR TPRTKPGGGG KHDASAATVA  120
AAAASAVPDL EAEESGIVGD TDHDVGEEDD EDLLYRVPVF DPMLAELYNP VAADDEEQQI  180
EQKPAARVVP FSEPSPEFAS GSVEADGLSG FDVPDMELAS FAADMESLLM GVDEGFDDLG  240
FLDDEKPHVK LDLDMDMDFA SISPAPEREE RKRKRPEMIL KLDYEGVIDS WARDGASPWF  300
HGERPLFDPG ESWPDFPAGS RGGLGAAVTA VTGGEREARV SRYREKRRTR LFAKKIRYEV  360
RKLNAEKRPR MKGRFVKRAA ALPPLPLPRH QHPPPPPPPR ALPPVPMMLA PRGAHGRYRF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
194100LKRRPRT
2346362RRTRLFAKKIRYEVRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1205630.0AK120563.1 Oryza sativa Japonica Group cDNA clone:J013132M18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628112.10.0zinc finger protein CONSTANS-LIKE 16
TrEMBLA0A0D9ZCC30.0A0A0D9ZCC3_9ORYZ; Uncharacterized protein
STRINGOGLUM03G31860.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100042228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.12e-23B-box type zinc finger protein with CCT domain