PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G29270.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 376aa    MW: 39058.6 Da    PI: 7.3781
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G29270.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.21.9e-15182228455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       h ++Er+RR++iN++f eL +++P +     kK++Ka+iL  Av+Y+k+Lq
  OGLUM03G29270.1 182 EHIIAERKRREKINQRFIELSTVIPGL-----KKMDKATILSDAVRYVKELQ 228
                      699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.406178227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-13181228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-19182238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.5E-18182242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.48E-16183232No hitNo description
SMARTSM003532.6E-16184233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MEDSSLFMEW AMETLQHLHP LPATPPPAAG DNATFPSLQA LRESSVSQNG MAPPEPTAHE  60
GHRASNSWSS GDTDSVSGGG GAAMEHDGWS TSPNSVRCAP GGGGGGVWPV SWNFSSAMTQ  120
PCNEATPPNP PTTTRARHGG GGVRYLPAAV SPSPSAQTRR ASSKGNGGGG SGSSSAAPYA  180
QEHIIAERKR REKINQRFIE LSTVIPGLKK MDKATILSDA VRYVKELQEK LSELEQHQNG  240
GVESAILLKK PCIAASSSEG GCPASASAVA GSSSSGTTAR SSLPEIEAKI SHGNVMVRIH  300
SENNGKGSLV RLLAAVEGLH LGITHTNVMP FSACTAVITI MAKVEDGVSV TAEDIVGKLN  360
IVLQQNSRNS ARETKS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1186191ERKRRE
2187192RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1071900.0AK107190.1 Oryza sativa Japonica Group cDNA clone:002-125-A03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629952.10.0transcription factor NAI1
TrEMBLA0A0D9ZBE70.0A0A0D9ZBE7_9ORYZ; Uncharacterized protein
STRINGOGLUM03G29270.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-29bHLH family protein