PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G25420.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 478aa    MW: 51255.4 Da    PI: 3.8742
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G25420.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM83.54.2e-2671481128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgk..dke 91 
                      lppG+rF+P+d+elv++yL +++++k+l+l+ vi ++d ++v Pw+L +  +++ +e +fF+ ++ k+ +gkr++r +   g+W+ +    d e
  OGLUM03G25420.1   7 LPPGLRFDPSDDELVSRYLLRRIQQKPLPLDGVIVDADPLSVPPWTLLAD-HTRGDEAFFFAGARAKNGKGKRQKRtVEGGGFWQGQRMavDGE 99 
                      79****************************999**************743.456789*******************555599**9665522222 PP

              NAM  92 vlsk........kgel..........vglkktLvfykgrapkgektdWvmheyrl 128
                                  +  +          ++ k +L f+  + ++g ++ Wvmhey++
  OGLUM03G25420.1 100 R--LvvpgdgggG--VdgsggggleiTWRKYVLSFFA-EGEQG-SSGWVMHEYAV 148
                      2..1234566550..15555666666999999****3.44443.89*******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.05E-324166IPR003441NAC domain
PROSITE profilePS5100529.2117167IPR003441NAC domain
PfamPF023654.4E-168147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MAGADGLPPG LRFDPSDDEL VSRYLLRRIQ QKPLPLDGVI VDADPLSVPP WTLLADHTRG  60
DEAFFFAGAR AKNGKGKRQK RTVEGGGFWQ GQRMAVDGER LVVPGDGGGG VDGSGGGGLE  120
ITWRKYVLSF FAEGEQGSSG WVMHEYAVTS SADLASSPLR LYRVQKRKRE PQCLDSHDDE  180
DGGDQERAAP RRGVALPAAD GTDQGSYGVI DGEPSLVSHC LPDQIVPPAE EADATAGAVD  240
EERWSPPQPA SPTAALVKQN SYDLMAISSL LFSDLPDRID DDDLSVSQTE GTELSEQGSS  300
GVIDDDYWWV FHGLSDLIAL PAEEADATGG AEREEIALLD EERCPQPQPA PPTDALVPPL  360
QGQNSYDVMA DSSLLFADLP GRIDDDELQR SLRVSDMPDL FLSQTEEAGA GGGGGAAPVL  420
NKQSNSSPLG VMDSEVPIVL SDLEFPESID EMLSYIDFAT DDCLDFDMDE LFSDMPAD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1355020.0AC135502.4 Oryza sativa chromosome 3 BAC OSJNBb0085A04 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630217.10.0NAC domain-containing protein 82
TrEMBLA0A0D9ZA270.0A0A0D9ZA27_9ORYZ; Uncharacterized protein
STRINGOGLUM03G25420.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80222137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.26e-14NAC domain containing protein 41