PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G20780.2
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 526aa    MW: 57535.2 Da    PI: 7.9284
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G20780.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.30.000324755141054
                      HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      +rRR+ri +  + Lr+++P      +k  +  ++L +A+ Y+k+L
  OGLUM03G20780.2 475 KRRRERIQETVAALRKIVPGG---IAK--DATAVLDEAICYLKYL 514
                      9******************97...333..3458999999999999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.597465514IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-6475521IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-6475522IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000830.00198475519No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MSRRKACVAA GAFPSEGADK RSRAAPHALA VSLSLSLSRP RLGLAVRLSL VSNSTRRGRP  60
PLQFLRLWPG RVCECSAPIA DSSSSSSSSC SIWSNMHGYP GSMRWLALSV DIFRKGISLN  120
LYCRSLKFGI EDLVAGIAVW VSVVAWQFFQ GERAGVLMVW QPVAQTRFRV FKHENGIAVR  180
VIACFQPSQD CQAEYFRHLL KPKILFAGCF LMGEKVNPWC HWSNPPWTES SANNLHPPDV  240
SLDNTNSVAL PTYLNSDGYI YSGVAASMPS IAASVTDRPV SFSSRFVTTL VPSVGLSTAE  300
TLRKRPLVFF HNVNNTFTVG PLLSKGTLDT VPELQGSNET NVTDVGAQNT ECMHENTEEI  360
DALLCSDSDE GCLKVQELNN RVRKYPMQND TMSVESVASA GASQPAKKRR LSSGTDRSVV  420
DTASSARPDH SVDQKHLSHD DDAQSCCIGE VESDHQFALR EGEEAEGDDG PDDRKRRRER  480
IQETVAALRK IVPGGIAKDA TAVLDEAICY LKYLKLKVKT LGAVSL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1473477RKRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0993230.0AC099323.6 Oryza sativa chromosome 3 BAC OSJNBa0065F09 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631787.10.0transcription factor PIF4
TrEMBLA0A0D9Z8E10.0A0A0D9Z8E1_9ORYZ; Uncharacterized protein
STRINGOGLUM03G20780.20.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100311820