PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G08850.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 888aa    MW: 99387.1 Da    PI: 5.1268
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G08850.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM61.23.3e-19712001128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 
                      lp+G++F+Ptd++l+  +L+++v + +      +  +e+ik+vd      +++P+d+p  ++++    yfF+k+ k+ a++  +++ ++   W+
  OGLUM03G08850.1  71 LPRGVEFNPTDSDLL-WHLAAEVGNGQarrhpfI--NEFIKSVDetigFGYTHPQDIP-GIRQDGCASYFFHKNFKECANE--NSKCIR---WQ 155
                      699************.789999988886776442..233554443333899*******.666777789******9999864..444445...** PP

              NAM  85 atgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                      ++g+  +++  +g+l g+k+++v+y  + + ++++ tdW +h+y++
  OGLUM03G08850.1 156 KSGNPISITL-DGNLQGCKEVFVLYayETDGNNPQITDWRLHQYHI 200
                      **********.999**********97767888889*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.53E-2563218IPR003441NAC domain
PROSITE profilePS5100521.77571218IPR003441NAC domain
PfamPF023654.1E-872200IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 888 aa     Download sequence    Send to blast
MAKDKEVGPP PPPCVDSDHE DLPLAERRRR LLRPPAESKP PAPERREASA AAAAAAAEDS  60
GGAAQQGWPG LPRGVEFNPT DSDLLWHLAA EVGNGQARRH PFINEFIKSV DETIGFGYTH  120
PQDIPGIRQD GCASYFFHKN FKECANENSK CIRWQKSGNP ISITLDGNLQ GCKEVFVLYA  180
YETDGNNPQI TDWRLHQYHI ESTEKDEGEL VVSKIFYELE KNQFKWAEKS HAQSAQGASA  240
IDDDSKEELQ LDNHSFNMIT ENSSVQGNEN KRKQTQTGTC PNLDKLSYFN VVSNMHIENQ  300
INDHDEIEEL DHMSLQERYR ILMAENHSSS AVVSSEQCAI DGLENSCKPG TNGMIPKRIH  360
EGTAFRDGMY SMLQGISSAP AIIGSIDNDN NRRLLTEGLS NNQQSHEAGC ESGFLSTSSS  420
AAPPQCQVVC SHDLLVNSKT LIYSRDPSSS STPTFGDKNI QLEGTDDRTL LVDVKLEPAL  480
EGDFTEKITS SVQRKDPNHG TEGSNLVGSI NSVSSAISKR ISEAARSNPE NSHVEGLLPS  540
SRIKSEVTGS ELPLVVCGLT SISIAELTAK KTNTLNHDGV LAYCSRKRKR RKTLRDPSEK  600
TLEEDSLRND EGTAYFSRQR RRRKTATDSI ETALEEDAPG LLQILLDKGI LVKEIKLYGV  660
EEEDDMVPDC TESDFQDLEN VITKLFPQRT SLLKSALRHE KGEKAIYCLT CLISLIEQSR  720
YLQFRDCPVE WGWCRDLQSF IFIFKSHNRI VLERPEYGYA TYFFEIVKSL PIQWQIQRMV  780
TAMKLSGCGR TALIENRPLL IGEDLTEGEA RVLEEYGWVP NSGLGTMLNY RDRVVHDRWN  840
ERSGTDWKTK IGKLLMNGYS EGHLVLSHFP TKVGKIEDDT EIKQEDPL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1585590RKRKRR
2585591RKRKRRK
3586591KRKRRK
4607620RNDEGTAYFSRQRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1052830.0AK105283.1 Oryza sativa Japonica Group cDNA clone:001-116-E01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632079.10.0uncharacterized protein LOC4332096
TrEMBLA0A0D9Z4340.0A0A0D9Z434_9ORYZ; Uncharacterized protein
STRINGOGLUM03G08850.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74793239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.11e-39NAC family protein