PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G02140.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 423aa    MW: 44856.9 Da    PI: 5.7157
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G02140.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_129.51.6e-09274332563
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                      kr +r   NR +A rs +RK  +i+eLe+kv+ L++e + L  +l +++  +a l +++
  OGLUM03G02140.1 274 KRVKRVLANRQSAARSKERKMRYIAELEQKVQILQSEATNLSAQLTMMQRDSAGLATQN 332
                      999***************************************99999888887776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.1E-15270334IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.599272335IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.19E-11274325No hitNo description
PfamPF001701.7E-8274332IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.3E-10274331No hitNo description
CDDcd147033.10E-22275326No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MNGGIGDALM QPQHVQVMSS SLPMVASTFV AEPAAANKPR AAGLPPTPPQ VFAAQRAAAA  60
AGGDVCMEES AQGGGGGLPP RKAHRRSSSD VPFGYLAGQH QLLPPKVEAG WGHLGAGAGG  120
AAAADDLFNA YLNLEGLDGL NSSDDRHDEG DSRGSSIKTN GADSSENESE ECADDGGIRL  180
WSADGGERRE GVKRNAAGEP ATAPLARHAR SLSMDSLIGK FNFTAGTAAA AGNGVALGPN  240
RFSLEFGSGE FTPSEMKKIM ADEKLAEMAL ADPKRVKRVL ANRQSAARSK ERKMRYIAEL  300
EQKVQILQSE ATNLSAQLTM MQRDSAGLAT QNNELKFRLH AMEQQAQLRD ALNEALTTEV  360
QRLKLATAEL GDSCSSSSLA QQIQLNAQNQ MFQLQQQQAT QIPFYQLQQS QQNGAAKNNE  420
SKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1044270.0AC104427.2 Oryza sativa Japonica Group chromosome 3 clone OJ1015F07, complete sequence.
GenBankAC1444260.0AC144426.1 Oryza sativa Japonica Group chromosome 3 clone OJA1015F07, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627932.10.0transcription factor RF2b-like
TrEMBLA0A0D9Z1J30.0A0A0D9Z1J3_9ORYZ; Uncharacterized protein
STRINGOGLUM03G02140.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35363576
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38900.34e-88bZIP family protein